Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA30_RS28820 Genome accession   NZ_CP108109
Coordinates   6751004..6751648 (+) Length   214 a.a.
NCBI ID   WP_328918036.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00223     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6746004..6756648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA30_RS28800 (OHA30_28820) - 6746528..6747451 (-) 924 WP_328916792.1 transglycosylase SLT domain-containing protein -
  OHA30_RS28805 (OHA30_28825) - 6747744..6748856 (-) 1113 WP_328916793.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHA30_RS28810 (OHA30_28830) - 6748853..6749560 (-) 708 WP_328916794.1 SDR family oxidoreductase -
  OHA30_RS28815 (OHA30_28835) - 6749752..6750960 (+) 1209 WP_328916795.1 GAF domain-containing sensor histidine kinase -
  OHA30_RS28820 (OHA30_28840) vraR 6751004..6751648 (+) 645 WP_328918036.1 response regulator transcription factor Regulator
  OHA30_RS28825 (OHA30_28845) - 6751874..6752113 (+) 240 WP_328916796.1 chaplin -
  OHA30_RS28830 (OHA30_28850) - 6752282..6753070 (-) 789 WP_328916797.1 hypothetical protein -
  OHA30_RS28835 (OHA30_28855) - 6753176..6753991 (+) 816 WP_328916798.1 ABC transporter ATP-binding protein -
  OHA30_RS28840 (OHA30_28860) - 6754055..6754489 (+) 435 WP_328916799.1 NfeD family protein -
  OHA30_RS28845 (OHA30_28865) - 6754624..6755574 (+) 951 WP_328916800.1 SPFH domain-containing protein -
  OHA30_RS28850 (OHA30_28870) - 6755767..6756534 (+) 768 WP_328916801.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22984.29 Da        Isoelectric Point: 5.6709

>NTDB_id=653958 OHA30_RS28820 WP_328918036.1 6751004..6751648(+) (vraR) [Streptomyces sp. NBC_00223]
MGGGRIIRVLLVDDHQVVRRGLRTFLEVQGDIEVVGEAGDGEEGVARAQELRPDVILMDVKMPGVDGIEALRLLHDAENP
ARVLIVTSFTEQRTVVPALRAGAAGYVYKDVDPVALADAIRSVHAGHVLLQPEVAGALLSQEQSPGTGRGNALTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRNGVGN

Nucleotide


Download         Length: 645 bp        

>NTDB_id=653958 OHA30_RS28820 WP_328918036.1 6751004..6751648(+) (vraR) [Streptomyces sp. NBC_00223]
GTGGGCGGCGGGCGGATCATCCGGGTGCTGCTGGTCGACGACCACCAGGTCGTGCGCCGGGGCCTGCGGACGTTCCTGGA
AGTGCAGGGCGACATCGAGGTCGTCGGCGAGGCGGGGGACGGCGAGGAGGGCGTGGCCCGCGCGCAGGAGCTGCGGCCCG
ACGTGATCCTGATGGACGTCAAGATGCCCGGCGTCGACGGCATCGAGGCCCTGCGGCTGCTGCACGACGCGGAGAACCCG
GCCAGGGTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTGGTGCCCGCGCTGCGGGCCGGGGCCGCCGGATACGT
CTACAAGGACGTCGACCCGGTCGCGCTCGCCGACGCGATCCGCTCGGTGCACGCCGGACACGTACTGCTCCAGCCCGAGG
TGGCCGGGGCGCTGCTCTCCCAGGAGCAGAGCCCGGGCACCGGCCGCGGCAACGCGCTGACCGAGCGCGAGCGGGAAGTG
CTCGGGCTGATCGCCGACGGCCGGTCCAACCGGGAGATCGCCCGCGCGCTGGTGCTGTCCGAGAAGACGGTGAAGACCCA
CGTCTCGAACATCCTCATGAAGCTGGACCTCGCCGACCGCACCCAGGCGGCGCTGTGGGCGGTGCGCAACGGGGTGGGGA
ACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(9-120)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.146

96.262

0.435
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

100

0.393