Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHA30_RS20570 Genome accession   NZ_CP108109
Coordinates   4866362..4867738 (-) Length   458 a.a.
NCBI ID   WP_328915335.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00223     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4861362..4872738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA30_RS20550 (OHA30_20555) - 4861934..4862464 (-) 531 WP_328915332.1 SigE family RNA polymerase sigma factor -
  OHA30_RS20555 (OHA30_20560) - 4862808..4863860 (-) 1053 WP_328915333.1 A/G-specific adenine glycosylase -
  OHA30_RS20560 (OHA30_20565) - 4864098..4864880 (+) 783 WP_328915334.1 hypothetical protein -
  OHA30_RS20565 (OHA30_20570) disA 4865021..4866079 (-) 1059 WP_328917921.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHA30_RS20570 (OHA30_20575) radA/sms 4866362..4867738 (-) 1377 WP_328915335.1 DNA repair protein RadA Machinery gene
  OHA30_RS20575 (OHA30_20580) - 4868009..4869670 (+) 1662 WP_328915336.1 hypothetical protein -
  OHA30_RS20580 (OHA30_20585) - 4869702..4870496 (-) 795 WP_328915337.1 hypothetical protein -
  OHA30_RS20585 (OHA30_20590) - 4870594..4871508 (+) 915 Protein_4064 Ppx/GppA phosphatase family protein -
  OHA30_RS20590 (OHA30_20595) - 4871684..4872535 (+) 852 WP_328917922.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 47887.89 Da        Isoelectric Point: 7.7048

>NTDB_id=653937 OHA30_RS20570 WP_328915335.1 4866362..4867738(-) (radA/sms) [Streptomyces sp. NBC_00223]
MASARKPASKDRPSYRCTECGWTAVKWLGRCGECQAWGTVEAYGGAPAVRTTAPGRVTSAARPIGQVDGRTATARSTGVP
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKASSEGGPTLYVTAEESASQVRLRADRIGAVADHLYLAAETDLSA
VLGHLDDVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLIRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDT
QIPSPRRTTSGLETSRVSMMLAVLEQRGRIKSIGKQDIYTATVGGVKLTEPAADLAVALALASAAIDTPLPQNLVAIGEV
GLAGEVRRVTGVQRRLSEAHRLGFTHALVPPDPGKVPAGMKVIEVADIGDALRTLPRR

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=653937 OHA30_RS20570 WP_328915335.1 4866362..4867738(-) (radA/sms) [Streptomyces sp. NBC_00223]
ATGGCTTCCGCCCGTAAACCCGCGTCCAAGGACCGTCCCTCCTACCGCTGCACCGAATGCGGCTGGACCGCGGTCAAGTG
GCTCGGCCGGTGCGGCGAGTGCCAGGCGTGGGGCACGGTCGAGGCGTACGGCGGCGCGCCCGCCGTACGGACCACCGCCC
CCGGCCGGGTGACCAGCGCCGCCCGTCCCATCGGCCAGGTGGACGGGCGCACGGCCACCGCGCGCAGCACCGGCGTCCCC
GAGCTGGACCGGGTGCTCGGCGGCGGCCTCGTGCCCGGCGCGGTGGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTC
CACGCTGCTGCTGGACGTGGCGGCGAAGGCGTCCAGCGAGGGGGGCCCGACGCTGTACGTGACCGCCGAGGAGTCCGCCT
CCCAGGTGCGGCTGCGGGCCGACCGGATCGGCGCGGTCGCCGATCACCTCTACCTCGCCGCCGAGACCGATCTGTCCGCG
GTCCTCGGGCACCTGGACGACGTGAAGCCGTCCCTGCTCGTGCTGGACTCGGTGCAGACCGTCGCCTCGCCCGAGATCGA
CGGCGCGCCCGGCGGCATGGCGCAGGTCCGCGAGGTCGCGGGCGCCCTGATCCGCGCCTCCAAGGAGCGCGGGATGTCGA
CGCTGCTGGTCGGCCACGTGACGAAGGACGGCGCCATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTCGTGCTG
AGCTTCGAGGGCGACCGGCACGCGCGGCTGCGGCTGATCCGCGGGGTGAAGAACCGCTACGGGGCCACGGACGAGGTCGG
CTGCTTCGAACTGCACGACGAGGGCATCACCGGACTCGCCGACCCGTCCGGGCTGTTCCTGACCCGGCGGGACGAGCCGG
TGCCGGGCACCTGTCTGACCGTGACACTCGAAGGGCGCCGGCCGCTGGTCGCGGAGGTGCAGGCGCTGACCGTGGACACC
CAGATCCCCTCGCCCCGGCGTACGACCTCGGGCCTGGAGACCTCGCGGGTGTCGATGATGCTCGCGGTGCTCGAACAGCG
CGGACGTATCAAGTCGATCGGCAAGCAGGACATCTACACGGCGACCGTCGGCGGGGTGAAGCTCACCGAGCCCGCGGCCG
ACCTCGCGGTGGCGCTGGCGCTGGCCAGCGCGGCGATCGACACCCCGCTGCCGCAGAATCTGGTCGCGATCGGCGAGGTC
GGGCTCGCGGGCGAGGTCAGACGCGTCACCGGGGTGCAGCGGCGGCTGTCCGAGGCGCACCGGCTGGGCTTCACCCACGC
GCTGGTCCCGCCGGACCCGGGGAAGGTGCCCGCGGGGATGAAGGTGATCGAGGTCGCCGACATCGGGGACGCGCTGCGCA
CACTGCCCCGACGCTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(15-41)

AAA domain (AAA_25)

(80-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.392

99.127

0.43
  radA Streptococcus mitis NCTC 12261

42.163

98.908

0.417
  radA Streptococcus pneumoniae D39

42.222

98.253

0.415
  radA Streptococcus pneumoniae TIGR4

42.222

98.253

0.415
  radA Streptococcus mitis SK321

42.222

98.253

0.415
  radA Streptococcus pneumoniae R6

42.222

98.253

0.415
  radA Streptococcus pneumoniae Rx1

42.222

98.253

0.415