Detailed information    

insolico Bioinformatically predicted

Overview

Name   disA   Type   Machinery gene
Locus tag   OHA30_RS20565 Genome accession   NZ_CP108109
Coordinates   4865021..4866079 (-) Length   352 a.a.
NCBI ID   WP_328917921.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00223     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4860021..4871079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA30_RS20540 (OHA30_20545) cseB 4860470..4861168 (-) 699 WP_328915330.1 two-component system response regulator CseB -
  OHA30_RS20545 (OHA30_20550) - 4861173..4861946 (-) 774 WP_328915331.1 hypothetical protein -
  OHA30_RS20550 (OHA30_20555) - 4861934..4862464 (-) 531 WP_328915332.1 SigE family RNA polymerase sigma factor -
  OHA30_RS20555 (OHA30_20560) - 4862808..4863860 (-) 1053 WP_328915333.1 A/G-specific adenine glycosylase -
  OHA30_RS20560 (OHA30_20565) - 4864098..4864880 (+) 783 WP_328915334.1 hypothetical protein -
  OHA30_RS20565 (OHA30_20570) disA 4865021..4866079 (-) 1059 WP_328917921.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHA30_RS20570 (OHA30_20575) radA/sms 4866362..4867738 (-) 1377 WP_328915335.1 DNA repair protein RadA Machinery gene
  OHA30_RS20575 (OHA30_20580) - 4868009..4869670 (+) 1662 WP_328915336.1 hypothetical protein -
  OHA30_RS20580 (OHA30_20585) - 4869702..4870496 (-) 795 WP_328915337.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38281.96 Da        Isoelectric Point: 4.9080

>NTDB_id=653936 OHA30_RS20565 WP_328917921.1 4865021..4866079(-) (disA) [Streptomyces sp. NBC_00223]
MRAALSAVAPGTSLRDGLERIVRGNTGGLIVLGMDKTVESLCTGGFVLDVEFTATRLRELCKLDGALILDKDITKILRAG
VQLVPDPTIPTEETGTRHRTADRVSRQVNFPVVSVSQSMRLIALYVDGQRRVLEDSAAILSRANQALATLERYKLRLDEV
AGTLSALEIEDLVTVRDVSAVAQRLEMVRRIATEIAEYVVELGTDGRLLTLQLDELIAGVEPERELVARDYVPEPTAKRS
RTVPEALAELDALPQGDLIELVTVAKALGYTGSPESLDSAVSPRGYRLLAKVPRLPNTVIERLVEHFGGLQKLLAASVDD
LQTVDGVGEARARSVREGLSRLAESSILERYV

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=653936 OHA30_RS20565 WP_328917921.1 4865021..4866079(-) (disA) [Streptomyces sp. NBC_00223]
ATGCGCGCCGCGCTGAGCGCCGTCGCGCCCGGCACCTCCCTGCGGGACGGCCTGGAGCGCATCGTCCGCGGCAACACCGG
CGGACTCATCGTGCTGGGCATGGACAAGACCGTCGAGTCGCTGTGCACCGGCGGTTTCGTGCTGGACGTGGAGTTCACCG
CGACCCGGCTGCGCGAGCTGTGCAAGCTGGACGGCGCGCTGATCCTCGACAAGGACATCACCAAGATCCTGCGGGCCGGG
GTCCAGCTCGTGCCGGACCCGACCATCCCGACCGAGGAGACCGGCACCCGGCACCGCACCGCGGACCGGGTCAGCCGGCA
GGTCAACTTCCCCGTGGTGTCGGTCAGCCAGTCGATGCGGCTGATCGCGCTGTACGTCGACGGTCAGCGCCGTGTGCTGG
AGGACTCCGCCGCGATCCTGTCCCGCGCCAACCAGGCGCTGGCCACACTTGAGCGCTACAAGCTGCGGCTCGACGAGGTG
GCGGGCACGCTGTCCGCGCTGGAGATCGAGGACCTGGTCACCGTACGGGACGTCAGCGCGGTCGCCCAGCGGCTGGAGAT
GGTCCGCCGGATCGCCACGGAGATCGCCGAGTACGTGGTGGAGTTGGGCACCGACGGACGGCTGCTCACGCTTCAGCTGG
ACGAGCTGATCGCGGGCGTCGAGCCCGAACGCGAGCTGGTCGCCCGGGACTACGTGCCGGAGCCGACGGCCAAGCGCAGC
CGTACGGTGCCGGAGGCGCTGGCCGAGCTGGACGCGCTGCCGCAGGGCGATCTGATCGAACTCGTCACGGTGGCAAAGGC
GTTGGGCTACACGGGTTCGCCCGAGTCGCTGGACTCCGCGGTGTCGCCGCGTGGTTACCGGCTGCTGGCGAAGGTGCCGA
GGCTGCCGAACACGGTGATAGAGCGGTTGGTCGAGCACTTCGGGGGGCTGCAAAAGCTGCTTGCCGCGAGTGTGGACGAT
CTGCAGACGGTCGACGGGGTCGGGGAGGCGCGAGCCCGCTCCGTGCGAGAGGGGCTCTCGCGGCTGGCCGAGTCCTCCAT
CCTGGAGCGCTACGTCTAG

Domains

Predicted by InterProScan.

DisA bacterial checkpoint controller linker region (DisA-linker)

(133-275)

DisA bacterial checkpoint controller nucleotide-binding (DAC)

(16-129)

Helix-hairpin-helix motif (HHH_2)

(301-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  disA Bacillus subtilis subsp. subtilis str. 168

45.714

99.432

0.455