Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHA30_RS15410 Genome accession   NZ_CP108109
Coordinates   3699630..3700229 (-) Length   199 a.a.
NCBI ID   WP_328917874.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00223     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3694630..3705229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA30_RS15390 (OHA30_15385) - 3694921..3696228 (-) 1308 WP_328914404.1 hypothetical protein -
  OHA30_RS15395 (OHA30_15390) - 3696225..3696845 (-) 621 WP_328917873.1 SigE family RNA polymerase sigma factor -
  OHA30_RS15400 (OHA30_15395) - 3697288..3698589 (-) 1302 WP_328914405.1 aspartate kinase -
  OHA30_RS15405 (OHA30_15400) - 3698840..3699637 (-) 798 WP_328914406.1 DUF5063 domain-containing protein -
  OHA30_RS15410 (OHA30_15405) recR 3699630..3700229 (-) 600 WP_328917874.1 recombination mediator RecR Machinery gene
  OHA30_RS15415 (OHA30_15410) - 3700392..3700727 (-) 336 WP_328914407.1 YbaB/EbfC family nucleoid-associated protein -
  OHA30_RS15420 (OHA30_15415) - 3700876..3703155 (-) 2280 WP_328914408.1 DNA polymerase III subunit gamma and tau -
  OHA30_RS15435 (OHA30_15430) - 3704221..3704766 (+) 546 WP_328914409.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21782.11 Da        Isoelectric Point: 5.3965

>NTDB_id=653926 OHA30_RS15410 WP_328917874.1 3699630..3700229(-) (recR) [Streptomyces sp. NBC_00223]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQADPADVRRLAHVLSEVKAKVRFCVVCGNVAQDDQCRVCRDPRRDPTV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=653926 OHA30_RS15410 WP_328917874.1 3699630..3700229(-) (recR) [Streptomyces sp. NBC_00223]
GTGTACGAAGGCGTGGTTCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTGGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGACCCCGCGGACGTTCGCCGTCTCGCGCACGTTCTCTCCGAGGTCAAGGCCAAGGTGC
GGTTCTGCGTGGTGTGCGGGAATGTCGCGCAGGACGACCAGTGCCGGGTGTGCCGTGATCCGCGCCGCGACCCCACGGTG
ATCTGTGTGGTCGAGGAGCCCAAGGACGTGGTGGCGGTCGAGCGCACCCGCGAGTTCCGCGGGAAGTACCACGTGCTGGG
CGGCGCGATCAGCCCGATCGAGGGTGTCGGCCCGGACGACCTGCGGATACGTGAACTGCTCGCCCGTCTCGCCGACGGCA
CCGTCACCGAGCTGATTCTGGCGACGGACCCGAACCTGGAAGGTGAGGCGACAGCCACGTATCTGGCCAGGATGGTGAAA
CCCATGGGTTTGCGGGTGACACGGCTGGCCAGTGGACTTCCTGTGGGTGGCGACTTGGAGTACGCGGACGAGGTCACGCT
GGGGCGGGCCTTCGAAGGGAGGCGGTTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462