Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA30_RS01165 Genome accession   NZ_CP108109
Coordinates   267103..267768 (-) Length   221 a.a.
NCBI ID   WP_328911875.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00223     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 262103..272768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA30_RS01145 (OHA30_01145) - 263153..264412 (+) 1260 WP_328917685.1 MFS transporter -
  OHA30_RS01150 (OHA30_01150) - 264539..264952 (-) 414 WP_328911872.1 MarR family transcriptional regulator -
  OHA30_RS01155 (OHA30_01155) - 265039..266550 (+) 1512 WP_328911873.1 MFS transporter -
  OHA30_RS01160 (OHA30_01160) - 266834..267142 (+) 309 WP_328911874.1 DUF6332 family protein -
  OHA30_RS01165 (OHA30_01165) vraR 267103..267768 (-) 666 WP_328911875.1 response regulator transcription factor Regulator
  OHA30_RS01170 (OHA30_01170) - 267765..269078 (-) 1314 WP_328911876.1 sensor histidine kinase -
  OHA30_RS01175 (OHA30_01175) - 269137..269889 (-) 753 WP_328911877.1 TetR/AcrR family transcriptional regulator -
  OHA30_RS01180 (OHA30_01180) - 270026..270496 (+) 471 WP_328911878.1 nitroreductase family deazaflavin-dependent oxidoreductase -
  OHA30_RS01185 (OHA30_01185) - 270520..271770 (-) 1251 WP_328911879.1 geranylgeranyl reductase family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24009.89 Da        Isoelectric Point: 4.7928

>NTDB_id=653906 OHA30_RS01165 WP_328911875.1 267103..267768(-) (vraR) [Streptomyces sp. NBC_00223]
MIRVLLADDQMLVRAGFRALLDAQGDIEVVGEASDGEQALRLVRELTPDAVLMDIRMPLMDGLAATRRITGEPALAQVKV
VILTTFELDEYVFEAIRAGASGFLVKDTEPEELLRAVRAVVDGDALLSPGVTRRLIAEFAARSKEPAAAADLERLTERER
EVMALVGIGLSNEEIARRLVVSPLTAKTHVSRAMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=653906 OHA30_RS01165 WP_328911875.1 267103..267768(-) (vraR) [Streptomyces sp. NBC_00223]
ATGATCCGCGTCCTGCTGGCCGACGACCAGATGCTGGTCAGAGCCGGTTTCCGCGCGCTGCTCGACGCCCAGGGCGACAT
CGAGGTGGTCGGCGAGGCGTCGGACGGCGAGCAGGCGCTGCGCCTGGTACGCGAACTGACCCCCGACGCCGTGCTGATGG
ACATCAGGATGCCGCTCATGGACGGCCTCGCCGCCACTCGGCGGATTACAGGAGAACCGGCCCTGGCCCAGGTCAAGGTG
GTCATCCTCACCACCTTCGAGCTGGACGAGTACGTCTTCGAGGCGATCCGGGCCGGCGCCTCCGGCTTTCTGGTCAAGGA
CACCGAGCCGGAGGAACTGCTGCGCGCGGTACGGGCGGTGGTGGACGGCGACGCGCTGCTGTCGCCCGGCGTGACCCGCC
GCCTCATCGCCGAGTTCGCCGCCCGCTCCAAGGAACCGGCCGCCGCCGCGGATCTGGAACGGCTCACCGAACGCGAACGC
GAGGTCATGGCCCTGGTCGGCATCGGCCTGTCGAACGAGGAGATCGCCCGCCGGCTCGTCGTCAGCCCGCTCACCGCCAA
GACGCACGTCAGCCGCGCCATGGTGAAGCTCGGCGCCCGCGACCGGGCCCAACTGGTCGTACTGGCCTATGAGTCAGGGT
TGGTACGGCCCGGCTGGCTGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.605

97.285

0.376
  degU Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.362