Detailed information NTG0653879

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L7D54_RS21390
• Genome accession: NZ_CP091846
• Coordinates: 4344925..4345725 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain NB05
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4339925..4350725

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L7D54_RS21355	gspH	4340081..4340596 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
L7D54_RS21360	gspI	4340593..4340958 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
L7D54_RS21365	gspJ	4340955..4341551 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
L7D54_RS21370	gspK	4341548..4342534 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
L7D54_RS21375	gspL	4342521..4343714 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
L7D54_RS21380	-	4343707..4344192 (+)	486	WP_004151943.1	type II secretion system protein M	-
L7D54_RS21385	-	4344182..4344928 (+)	747	WP_004145897.1	type II secretion system protein N	-
L7D54_RS21390	pilD	4344925..4345725 (+)	801	WP_002888947.1	prepilin peptidase	Machinery gene
L7D54_RS21395	hrpB	4345773..4348202 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
L7D54_RS21400	thpR	4348275..4348811 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
L7D54_RS21405	sfsA	4348811..4349527 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
L7D54_RS21410	dksA	4349690..4350145 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=653879 L7D54_RS21390 WP_002888947.1 4344925..4345725(+) (pilD) [Klebsiella pneumoniae strain NB05]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=653879 L7D54_RS21390 WP_002888947.1 4344925..4345725(+) (pilD) [Klebsiella pneumoniae strain NB05]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425