Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG965_RS27775 Genome accession   NZ_CP108106
Coordinates   6179695..6180339 (-) Length   214 a.a.
NCBI ID   WP_371654775.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00224     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6174695..6185339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG965_RS27755 (OG965_27690) atpD 6175009..6176451 (+) 1443 WP_371654771.1 F0F1 ATP synthase subunit beta -
  OG965_RS27760 (OG965_27695) - 6176570..6176944 (+) 375 WP_371654772.1 F0F1 ATP synthase subunit epsilon -
  OG965_RS27765 (OG965_27700) - 6177082..6177528 (+) 447 WP_371654773.1 DUF2550 domain-containing protein -
  OG965_RS27770 (OG965_27705) - 6177660..6179519 (-) 1860 WP_371654774.1 glycosyl hydrolase family 18 protein -
  OG965_RS27775 (OG965_27710) vraR 6179695..6180339 (-) 645 WP_371654775.1 response regulator Regulator
  OG965_RS27780 (OG965_27715) - 6180336..6181529 (-) 1194 WP_371654776.1 sensor histidine kinase -
  OG965_RS27785 (OG965_27720) - 6181728..6182288 (+) 561 WP_371654777.1 hypothetical protein -
  OG965_RS27790 (OG965_27725) - 6182349..6182921 (-) 573 WP_371654778.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OG965_RS27795 (OG965_27730) - 6183147..6183995 (+) 849 WP_371654779.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  OG965_RS27800 (OG965_27735) - 6184155..6184478 (+) 324 WP_067163978.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22608.18 Da        Isoelectric Point: 4.7378

>NTDB_id=653879 OG965_RS27775 WP_371654775.1 6179695..6180339(-) (vraR) [Streptomyces sp. NBC_00224]
MTIRVLVAEDQSSVRAGLVLILGSAPDIEVAGEAADGEEAVRLARELRPDLVLMDVQMPRLDGVSATRQVVAEQLADVLV
LTTFDLDEYVFGALRAGAAGFLLKNTEARDLIEAVRTVARGEGLIAPAVTRRLIAEFAAPAAKAPAVPPAALDALTRRER
EVLSCLGEGLSNAEIAGRLAMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGV

Nucleotide


Download         Length: 645 bp        

>NTDB_id=653879 OG965_RS27775 WP_371654775.1 6179695..6180339(-) (vraR) [Streptomyces sp. NBC_00224]
ATGACGATCCGGGTGCTGGTCGCGGAGGACCAGTCGTCGGTACGGGCCGGTCTGGTCCTGATCCTGGGCAGTGCCCCGGA
CATCGAGGTGGCCGGGGAGGCCGCCGACGGCGAGGAGGCGGTGCGGCTGGCCCGCGAACTGCGCCCGGACCTGGTGCTCA
TGGATGTGCAGATGCCCCGGCTCGACGGGGTGTCGGCGACCCGTCAGGTGGTCGCGGAGCAACTGGCCGATGTGCTGGTC
CTGACGACGTTCGACCTCGACGAGTACGTCTTCGGGGCGCTGCGCGCGGGCGCGGCGGGGTTCCTGCTGAAGAACACCGA
GGCGAGGGACCTGATCGAGGCGGTACGGACGGTGGCGCGCGGCGAGGGGCTGATCGCCCCGGCCGTCACCCGCCGGCTGA
TCGCGGAGTTCGCGGCTCCGGCGGCCAAGGCGCCCGCCGTGCCGCCGGCCGCCCTGGACGCGCTGACCCGCCGCGAGCGG
GAGGTGCTTTCGTGCCTGGGCGAGGGTCTGTCGAACGCCGAGATCGCGGGGCGCCTTGCGATGGCGGAGGCCACGGTGAA
GACCCATGTCAGCCGGTTGCTGGGGAAGCTGGAGCTGCGCAGCCGGGTCCAAGCGGCCGTACTGGCACAGGAGTTGGGTG
TCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.18

98.598

0.416
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407