Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG965_RS23315 Genome accession   NZ_CP108106
Coordinates   5228793..5230202 (-) Length   469 a.a.
NCBI ID   WP_371654018.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00224     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5223793..5235202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG965_RS23290 (OG965_23235) - 5223920..5224528 (-) 609 WP_371654013.1 SigE family RNA polymerase sigma factor -
  OG965_RS23295 (OG965_23240) - 5224869..5225780 (-) 912 WP_371654014.1 A/G-specific adenine glycosylase -
  OG965_RS23300 (OG965_23245) - 5225833..5226447 (-) 615 WP_371654015.1 phosphatase PAP2 family protein -
  OG965_RS23305 (OG965_23250) - 5226560..5227402 (+) 843 WP_371654016.1 hypothetical protein -
  OG965_RS23310 (OG965_23255) disA 5227632..5228756 (-) 1125 WP_371654017.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG965_RS23315 (OG965_23260) radA/sms 5228793..5230202 (-) 1410 WP_371654018.1 DNA repair protein RadA Machinery gene
  OG965_RS23320 (OG965_23265) - 5230401..5232131 (+) 1731 WP_371654019.1 hypothetical protein -
  OG965_RS23325 (OG965_23270) - 5232152..5232964 (-) 813 WP_371654020.1 hypothetical protein -
  OG965_RS23330 (OG965_23275) - 5233005..5233937 (+) 933 WP_371654021.1 Ppx/GppA family phosphatase -
  OG965_RS23335 (OG965_23280) - 5234038..5234853 (+) 816 WP_188272957.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49422.39 Da        Isoelectric Point: 7.4353

>NTDB_id=653869 OG965_RS23315 WP_371654018.1 5228793..5230202(-) (radA/sms) [Streptomyces sp. NBC_00224]
MATRTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTSAGRVSAAAVPIGQVDARQATARSTGVDEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVASKAAGEEHRTLYVTGEESASQVRLRADRINALNDHLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVTEVADMGDALRVLPRGRRADAPRGEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=653869 OG965_RS23315 WP_371654018.1 5228793..5230202(-) (radA/sms) [Streptomyces sp. NBC_00224]
ATGGCTACCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGAACGGTCGAGGAGTACGGCGCGCCCGCTGTGCGCACCACGTCGGCGGGCC
GGGTCTCCGCCGCCGCGGTGCCGATCGGCCAGGTGGACGCCCGCCAGGCCACCGCGCGCTCGACCGGCGTCGACGAGCTG
GACCGCGTCCTGGGCGGCGGGCTCGTCCCGGGCGCGGTGGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTCGACGTCGCCTCCAAGGCGGCCGGCGAGGAGCACCGCACGCTGTATGTGACGGGCGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGGATCAACGCGCTCAACGACCATCTGTATCTGGCGGCCGAGACGGACCTCTCCGCGGTGCTC
GGCCATCTGGACGCGGTCAAGCCGTCCCTGCTCGTCCTCGACTCCGTCCAGACCGTGGCCTCCCCGGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTGCGCGAGGTCGCCGGCGCGCTGATCCGCGCCTCGAAGGAGCGCGGGATGGCGACGCTCC
TGGTCGGCCACGTGACGAAGGACGGCGCGATCGCGGGCCCCCGTCTCCTCGAACACCTCGTGGACGTGGTCCTGTCCTTC
GAGGGCGACCGCCACGCGCGCCTGCGGCTGGTGCGCGGCGTGAAGAACCGGTACGGGGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTGGCCGACCCGTCGGGCCTGTTCCTCACCCGGCGGGACGAACCGGTGCCGG
GCACGTGTCTGACGGTGACCCTGGAGGGCCGCAGGCCCCTGGTGGCCGAGGTCCAGGCGCTCACCGTCGACTCCCAGATC
CCCTCCCCCCGCCGCACCACGTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCGGTCCTGGAGCAGCGCGGGCG
GATCAGCGCGCTGGGCAAGCGCGACATCTACAGCGCCACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCGGCGGACCTGG
CCATCGCCCTCGCGCTGGCGTCGGCGGCGAGCGACACCCCGCTGCCGAAGAACCTGGTGGCGATCGGTGAGGTGGGGCTC
GCGGGCGAGGTCAGACGGGTGACGGGCGTCCAGCGCCGGCTCGCCGAGGCCCACCGTCTGGGCTTCACACACGCGCTGGT
GCCGTCCGACCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGGGACGCGCTTCGGGTGCTGC
CGCGCGGGCGTCGCGCGGACGCCCCACGGGGGGAGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(81-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.588

0.422
  radA Streptococcus pneumoniae Rx1

42.035

96.375

0.405
  radA Streptococcus pneumoniae D39

42.035

96.375

0.405
  radA Streptococcus pneumoniae R6

42.035

96.375

0.405
  radA Streptococcus pneumoniae TIGR4

42.035

96.375

0.405
  radA Streptococcus mitis SK321

43.458

91.258

0.397
  radA Streptococcus mitis NCTC 12261

43.458

91.258

0.397