Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG965_RS20470 Genome accession   NZ_CP108106
Coordinates   4611542..4612213 (-) Length   223 a.a.
NCBI ID   WP_371653535.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00224     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4606542..4617213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG965_RS20450 (OG965_20395) - 4606675..4607499 (+) 825 WP_371653531.1 diacylglycerol kinase -
  OG965_RS20455 (OG965_20400) - 4607760..4609247 (-) 1488 WP_371653532.1 MFS transporter -
  OG965_RS20460 (OG965_20405) - 4609381..4610106 (+) 726 WP_371653533.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
  OG965_RS20465 (OG965_20410) - 4610103..4611329 (-) 1227 WP_371653534.1 cytochrome P450 -
  OG965_RS20470 (OG965_20415) vraR 4611542..4612213 (-) 672 WP_371653535.1 response regulator Regulator
  OG965_RS20475 (OG965_20420) - 4612210..4613577 (-) 1368 WP_371653536.1 sensor histidine kinase -
  OG965_RS20480 (OG965_20425) - 4613675..4614547 (-) 873 WP_371653537.1 alpha/beta hydrolase -
  OG965_RS20485 (OG965_20430) kynU 4614804..4615994 (-) 1191 WP_371653538.1 kynureninase -
  OG965_RS20490 (OG965_20435) - 4615987..4616847 (-) 861 WP_371653539.1 tryptophan 2,3-dioxygenase family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24435.08 Da        Isoelectric Point: 4.6341

>NTDB_id=653858 OG965_RS20470 WP_371653535.1 4611542..4612213(-) (vraR) [Streptomyces sp. NBC_00224]
MSEASIRVLIVDDQMMVREGFSVLLNAQRDIEVIGEAVDGREAVAKVRELRPDVVLMDIRMPEMNGIEATREIVAADTEA
RVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLAEGVRVVASGDALLAPSVTRRLITEFARSTPVRRGVSGVVEVEEL
TDRETEVLILIAQGLSNAEIADRLVVAESTIKTHVSRVLVKLGLRDRTQAAVYAYESRLITPS

Nucleotide


Download         Length: 672 bp        

>NTDB_id=653858 OG965_RS20470 WP_371653535.1 4611542..4612213(-) (vraR) [Streptomyces sp. NBC_00224]
ATGAGCGAGGCGAGCATCCGCGTACTGATCGTCGACGACCAGATGATGGTCCGGGAGGGCTTCTCGGTCCTGCTCAACGC
CCAGCGCGACATCGAGGTGATCGGCGAGGCGGTCGACGGCCGGGAGGCGGTGGCCAAGGTCCGCGAACTCCGCCCCGACG
TGGTCCTGATGGACATCCGCATGCCCGAGATGAACGGCATCGAGGCGACGCGGGAGATCGTGGCGGCGGACACCGAGGCG
AGGGTGCTGGTGCTGACCACCTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGGGCCGGGGCGTCGGGGTTCCTCCT
GAAGGACGCGTCCGCGCGTCAACTCGCGGAGGGTGTACGGGTGGTGGCCTCCGGCGACGCGCTCCTCGCCCCGTCCGTGA
CGCGCCGCCTGATCACCGAGTTCGCCCGTTCGACGCCGGTGCGGCGGGGGGTGTCGGGAGTGGTGGAGGTCGAGGAGCTG
ACCGACCGCGAAACGGAGGTCCTGATCCTGATAGCCCAGGGCCTCTCCAACGCGGAGATCGCGGACCGGTTGGTGGTGGC
GGAGTCGACGATCAAGACGCATGTGAGCCGGGTGCTGGTGAAACTGGGCCTGCGCGACCGTACGCAGGCGGCGGTGTACG
CGTACGAATCCCGCCTGATAACCCCGTCCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-118)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.519

96.861

0.422
  degU Bacillus subtilis subsp. subtilis str. 168

40.708

100

0.413