Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG965_RS14915 Genome accession   NZ_CP108106
Coordinates   3320873..3321547 (+) Length   224 a.a.
NCBI ID   WP_371652555.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00224     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3315873..3326547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG965_RS14895 (OG965_14855) - 3316483..3316851 (-) 369 WP_371652551.1 peptidase inhibitor family I36 protein -
  OG965_RS14900 (OG965_14865) - 3317319..3318530 (+) 1212 WP_371652552.1 alpha/beta hydrolase -
  OG965_RS14905 (OG965_14870) - 3318627..3319487 (+) 861 WP_371652553.1 DUF4429 domain-containing protein -
  OG965_RS14910 (OG965_14875) - 3319542..3320876 (+) 1335 WP_371652554.1 sensor histidine kinase -
  OG965_RS14915 (OG965_14880) vraR 3320873..3321547 (+) 675 WP_371652555.1 response regulator Regulator
  OG965_RS14920 (OG965_14885) - 3321675..3322715 (+) 1041 WP_371652556.1 alpha/beta hydrolase -
  OG965_RS14925 (OG965_14890) - 3322760..3323788 (-) 1029 WP_371652557.1 aldo/keto reductase -
  OG965_RS14930 (OG965_14895) - 3323795..3324256 (-) 462 WP_371652558.1 MerR family transcriptional regulator -
  OG965_RS14935 (OG965_14900) - 3324339..3325151 (+) 813 WP_371652559.1 serine hydrolase domain-containing protein -
  OG965_RS14940 (OG965_14905) - 3325273..3325932 (-) 660 WP_371652560.1 pirin family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24078.98 Da        Isoelectric Point: 5.7711

>NTDB_id=653843 OG965_RS14915 WP_371652555.1 3320873..3321547(+) (vraR) [Streptomyces sp. NBC_00224]
MTIRVIIVDDQAMVRAGFAALLSAQADIDVVGEAPDGRQGIEVARRTHPDVVLMDVRMPEMDGLAAARELLDPPPGVVHR
PKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGEALLAPSVTRRLIADFARQRPPVRKAPALRLNGL
TPRETEVLELIARGLSNQEIAASLILAEQTVKTHIGRVLAKLELRDRAQAVIFAYESGLVSPGS

Nucleotide


Download         Length: 675 bp        

>NTDB_id=653843 OG965_RS14915 WP_371652555.1 3320873..3321547(+) (vraR) [Streptomyces sp. NBC_00224]
TTGACCATTCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCGGGGTTCGCCGCGCTGCTCTCCGCGCAGGCGGA
CATCGACGTGGTGGGCGAGGCTCCCGACGGCAGGCAGGGCATCGAGGTCGCCCGCCGCACGCATCCCGACGTGGTGCTGA
TGGACGTCCGGATGCCGGAGATGGACGGGCTCGCGGCGGCGCGGGAGCTCCTCGACCCGCCGCCCGGGGTGGTCCACCGG
CCGAAGGTCCTGATGCTGACGACGTTCGACGTGGACGACTACGTGTACGAGGCGCTGCGGGCCGGGGCGTCCGGGTTCCT
GCTGAAGGACGCGCCGCCGGCGGATCTGATCGCGGCGGTACGGGTGGTGGCGGCGGGCGAGGCACTGCTCGCGCCCTCCG
TGACGCGCCGTCTGATCGCGGACTTCGCCAGGCAGCGCCCGCCGGTCCGCAAGGCCCCGGCCCTGCGGCTGAACGGGCTC
ACCCCGCGCGAGACGGAGGTCCTGGAACTGATCGCCCGGGGCCTGTCCAACCAGGAGATCGCGGCGAGCCTGATCCTCGC
CGAGCAGACCGTGAAGACCCACATCGGCCGCGTCCTGGCCAAGCTGGAGCTGCGCGACCGGGCGCAGGCGGTGATCTTCG
CGTACGAGTCGGGGCTGGTGTCGCCGGGGTCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.727

98.214

0.42
  degU Bacillus subtilis subsp. subtilis str. 168

37.719

100

0.384