Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG537_RS36920 Genome accession   NZ_CP108102
Coordinates   8285636..8286298 (-) Length   220 a.a.
NCBI ID   WP_328832859.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00228     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8280636..8291298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG537_RS36900 (OG537_36875) - 8281259..8282089 (-) 831 WP_328934871.1 alpha/beta fold hydrolase -
  OG537_RS36905 (OG537_36880) - 8282257..8283141 (+) 885 WP_328832857.1 RNA polymerase sigma-70 factor -
  OG537_RS36910 (OG537_36885) - 8283382..8284143 (+) 762 WP_328934872.1 GntR family transcriptional regulator -
  OG537_RS36915 (OG537_36890) - 8284382..8285536 (-) 1155 WP_266766712.1 ROK family transcriptional regulator -
  OG537_RS36920 (OG537_36895) vraR 8285636..8286298 (-) 663 WP_328832859.1 response regulator transcription factor Regulator
  OG537_RS36925 (OG537_36900) - 8286313..8287467 (-) 1155 WP_328934873.1 histidine kinase -
  OG537_RS36930 (OG537_36905) - 8287576..8288496 (+) 921 WP_328934874.1 ABC transporter ATP-binding protein -
  OG537_RS36935 (OG537_36910) - 8288499..8289221 (+) 723 WP_328934875.1 ABC transporter permease -
  OG537_RS36940 (OG537_36915) mug 8289372..8289917 (-) 546 WP_328936195.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23524.14 Da        Isoelectric Point: 4.8723

>NTDB_id=653802 OG537_RS36920 WP_328832859.1 8285636..8286298(-) (vraR) [Streptomyces sp. NBC_00228]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRTVDDPPKI
LVITTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEYGDGGGNRAARAVMERARLTER
EAEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=653802 OG537_RS36920 WP_328832859.1 8285636..8286298(-) (vraR) [Streptomyces sp. NBC_00228]
ATGCCGGTCACCGTTCTCCTGGTCGATGACGAACCCCTCGTACGCGCGGGTCTGCGGGCCGTGCTGGAGGCGCAGCCGGA
CATCGAGGTGGTCGGGGAGGCCGCCGACGGGGCCGCGGTGATCCCGCTGGTGCGGCAGCTGCGGCCCGACGTGGTCGCCA
TGGACGTACGGATGCCGCTCCTTGACGGCATCGAGGCCACGCGCGCGGTGCTGCGCACGGTCGACGATCCGCCGAAGATC
CTGGTCATCACGACCTTCGAGAACGACGAGTACGTCTACGAGGCTTTGCGCGCCGGTGCCGACGGGTTCCTGCTGAAGCG
GGCCCGGCCGGCCGAGATCGTGCACGCGGTACGCCTGGTGGCCGAGGGCGAGTCGCTGCTGTTCCCCGCCTCCGTACGGC
AGTTGGCCGCCGAGTACGGCGATGGCGGCGGGAACCGGGCGGCCCGCGCGGTGATGGAGCGGGCCCGGCTGACCGAGCGT
GAGGCCGAGGTGCTGCGGCTGATGGCGCGGGGTCTGTCGAACGCGGAGATCGCCGCGCGGCTGGTCGTCGGGACCGAGAC
GGTGAAGTCGCATGTGAGCGCCGTACTGGCGAAGCTGGGGGCCCGGGACCGTACGCAGGCGGTGATCGCGGCGTACGAGT
CGGGGTTCGTGGCGCCGGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(157-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.096

99.545

0.409
  degU Bacillus subtilis subsp. subtilis str. 168

36.607

100

0.373