Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG537_RS24290 Genome accession   NZ_CP108102
Coordinates   5515400..5516809 (-) Length   469 a.a.
NCBI ID   WP_266769766.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5510400..5521809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG537_RS24265 (OG537_24245) - 5510488..5511081 (-) 594 WP_328834340.1 hypothetical protein -
  OG537_RS24270 (OG537_24250) - 5511165..5511704 (-) 540 WP_019064956.1 SigE family RNA polymerase sigma factor -
  OG537_RS24275 (OG537_24255) - 5512005..5512946 (-) 942 WP_328933565.1 A/G-specific adenine glycosylase -
  OG537_RS24280 (OG537_24260) - 5513329..5514159 (+) 831 WP_328933566.1 hypothetical protein -
  OG537_RS24285 (OG537_24265) disA 5514204..5515262 (-) 1059 WP_328834341.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG537_RS24290 (OG537_24270) radA/sms 5515400..5516809 (-) 1410 WP_266769766.1 DNA repair protein RadA Machinery gene
  OG537_RS24295 (OG537_24275) - 5517008..5518705 (+) 1698 WP_328933567.1 hypothetical protein -
  OG537_RS24300 (OG537_24280) - 5518709..5519566 (-) 858 WP_328933568.1 hypothetical protein -
  OG537_RS24305 (OG537_24285) - 5519650..5520582 (+) 933 WP_266769761.1 Ppx/GppA phosphatase family protein -
  OG537_RS24310 (OG537_24290) - 5520981..5521805 (+) 825 WP_328933569.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49694.80 Da        Isoelectric Point: 8.0018

>NTDB_id=653777 OG537_RS24290 WP_266769766.1 5515400..5516809(-) (radA/sms) [Streptomyces sp. NBC_00228]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDGRTATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASEEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLATIL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKIPAGMKVIEVADIGDALRVLPRSRKREAPRDDEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=653777 OG537_RS24290 WP_266769766.1 5515400..5516809(-) (radA/sms) [Streptomyces sp. NBC_00228]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGACCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCTCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCTGTCCGTACGACCGCCCCCGGCC
GCGTCACCACCTCCGCGGTCCCGATCGGCCAGGTCGACGGCCGTACGGCCACCGCCCGTTCGACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTGGTCCCCGGAGCGGTCGTCCTCGTCGCGGGCGAACCGGGCGTGGGCAAGTCGACCCT
CCTCCTGGACGTGGCGGCGAAGTCGGCGAGCGAGGAGCACCGCACGCTCTATGTCACCGGTGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTGTATCTCGCCGCCGAGACCGATCTGGCCACGATCCTG
GGCCACTTGGACGCGGTGAAGCCCTCCCTGCTCATCCTGGACTCCGTGCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
CCCCGGAGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTCC
TGGTGGGCCACGTCACCAAGGACGGCGCGATCGCCGGCCCCCGCCTCCTGGAGCACCTGGTGGACGTGGTGCTCTCCTTC
GAGGGCGACCGCCACGCCCGCCTGCGTCTCGTACGGGGCGTCAAGAACCGCTACGGCACGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGGCTGGCCGACCCCAGCGGTCTGTTCCTGACCCGCCGCGCGGAGCCGGTCCCCG
GCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCCCAGATC
CCCTCCCCCCGGCGCACCACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTCGCGGTCCTGGAGCAGCGCGGCAG
GATCAGCGCCCTGGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCGGCCGCGGATCTGG
CCATCGCGCTCGCCCTGGCCTCCGCGGCGAGCGACACCCCCCTCCCCAAGAACCTGGTGGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGGCTCTCCGAAGCGCACCGTCTGGGCTTCACCCACGCCCTCGT
CCCGAGCGACCCGGGCAAAATCCCGGCGGGCATGAAGGTCATCGAAGTGGCCGACATAGGAGACGCTCTCCGGGTCCTCC
CGCGCTCCCGTAAGCGAGAGGCCCCACGGGACGACGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus mitis SK321

42.699

96.375

0.412
  radA Streptococcus mitis NCTC 12261

42.699

96.375

0.412
  radA Streptococcus pneumoniae Rx1

42.762

95.736

0.409
  radA Streptococcus pneumoniae TIGR4

42.762

95.736

0.409
  radA Streptococcus pneumoniae D39

42.762

95.736

0.409
  radA Streptococcus pneumoniae R6

42.762

95.736

0.409