Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG537_RS23335 Genome accession   NZ_CP108102
Coordinates   5311302..5311901 (+) Length   199 a.a.
NCBI ID   WP_328830640.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5306302..5316901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG537_RS23320 (OG537_23300) - 5308367..5309893 (+) 1527 WP_328933479.1 substrate-binding domain-containing protein -
  OG537_RS23325 (OG537_23305) - 5309913..5310623 (-) 711 WP_328933480.1 SLATT domain-containing protein -
  OG537_RS23330 (OG537_23310) - 5310885..5311232 (+) 348 WP_328830639.1 YbaB/EbfC family nucleoid-associated protein -
  OG537_RS23335 (OG537_23315) recR 5311302..5311901 (+) 600 WP_328830640.1 recombination mediator RecR Machinery gene
  OG537_RS23340 (OG537_23320) - 5311894..5312553 (+) 660 WP_266770016.1 DUF5063 domain-containing protein -
  OG537_RS23345 (OG537_23325) - 5312591..5313310 (-) 720 WP_328830641.1 sulfite exporter TauE/SafE family protein -
  OG537_RS23350 (OG537_23330) - 5313563..5314834 (+) 1272 WP_266770013.1 aspartate kinase -
  OG537_RS23355 (OG537_23335) - 5314834..5315901 (+) 1068 WP_328830642.1 aspartate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21826.27 Da        Isoelectric Point: 4.9908

>NTDB_id=653772 OG537_RS23335 WP_328830640.1 5311302..5311901(+) (recR) [Streptomyces sp. NBC_00228]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCNICRDPRRDLTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGSVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=653772 OG537_RS23335 WP_328830640.1 5311302..5311901(+) (recR) [Streptomyces sp. NBC_00228]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGGCGACTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTCCGCCGGCTCGCGCAGTGCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTCACGGTG
ATCTGTGTCGTGGAGGAGCCGAAGGACGTGGTCGCGATCGAGCGGACGCGTGAGTTCCGGGGCAAGTACCACGTCCTGGG
CGGCGCGATCAGCCCGATCGAGGGGGTCGGACCCGACGACCTGCGTATACGAGAACTTCTCGCGCGGTTGGCCGACGGTT
CCGTCACGGAACTGATCCTTGCCACGGACCCGAATCTGGAGGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462