Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG230_RS34925 Genome accession   NZ_CP108101
Coordinates   7978929..7979585 (+) Length   218 a.a.
NCBI ID   WP_328907782.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7973929..7984585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS34910 (OG230_34920) - 7975979..7976596 (-) 618 WP_328907779.1 DinB family protein -
  OG230_RS34915 (OG230_34925) - 7976716..7977570 (-) 855 WP_328907780.1 hypothetical protein -
  OG230_RS34920 (OG230_34930) - 7977742..7978932 (+) 1191 WP_328907781.1 sensor histidine kinase -
  OG230_RS34925 (OG230_34935) vraR 7978929..7979585 (+) 657 WP_328907782.1 response regulator transcription factor Regulator
  OG230_RS34930 (OG230_34940) - 7979659..7980459 (+) 801 WP_328907783.1 hypothetical protein -
  OG230_RS34935 (OG230_34945) - 7980465..7981196 (+) 732 WP_328907784.1 alpha/beta hydrolase -
  OG230_RS34940 (OG230_34950) - 7981310..7982821 (+) 1512 WP_328907785.1 hypothetical protein -
  OG230_RS34945 (OG230_34955) - 7982997..7983977 (+) 981 WP_328911624.1 alpha/beta hydrolase -
  OG230_RS34950 (OG230_34960) - 7984265..7984435 (+) 171 WP_328907786.1 hydrophobic protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23460.98 Da        Isoelectric Point: 4.8334

>NTDB_id=653725 OG230_RS34925 WP_328907782.1 7978929..7979585(+) (vraR) [Streptomyces sp. NBC_00234]
MTIRVLLADDQPLVRSGLRVLMADTDDIRVVGEAANGAEAHQLVRDVHPDVVLMDIRMPGMDGIEATRIIAGEATTTRVL
ILTTFDDDDSVYAALRSGASGFLVKNMDLDDILAAVRVVAAGDALIAPSVTRRLIEEFAARPEPAPRSRAVEGVTERERE
VLTLIGRGLSNSEIAAQLCISVSTAKAHVARLLSKLDARDRVQLVILAYETGLVTPSR

Nucleotide


Download         Length: 657 bp        

>NTDB_id=653725 OG230_RS34925 WP_328907782.1 7978929..7979585(+) (vraR) [Streptomyces sp. NBC_00234]
ATGACGATCCGCGTCCTGCTCGCAGACGACCAGCCGCTGGTACGTTCCGGCCTGCGTGTGCTGATGGCCGACACCGACGA
CATCCGCGTCGTCGGAGAGGCCGCGAACGGCGCCGAGGCACACCAGCTGGTCAGGGACGTCCACCCCGACGTGGTGCTGA
TGGATATCCGGATGCCCGGTATGGACGGCATCGAGGCCACCCGGATCATCGCCGGCGAGGCCACGACGACACGCGTGCTG
ATCCTCACCACGTTCGACGACGACGACTCCGTGTACGCGGCGCTGCGTTCCGGCGCGAGCGGGTTCCTCGTCAAGAACAT
GGACCTGGACGACATCCTCGCAGCAGTCCGCGTGGTCGCCGCCGGAGACGCCCTCATCGCTCCGAGCGTCACCCGCCGTC
TCATCGAGGAGTTCGCCGCACGCCCCGAACCGGCTCCCCGGTCGCGTGCGGTCGAGGGCGTCACGGAGCGGGAGCGCGAG
GTACTGACGCTCATCGGCCGCGGCCTGTCCAACAGCGAGATCGCCGCCCAGCTCTGCATCAGCGTGTCGACGGCCAAGGC
GCACGTGGCACGCCTGCTGTCGAAACTCGACGCCCGCGACCGGGTGCAACTCGTCATCCTCGCCTACGAGACGGGGCTGG
TGACACCGTCCCGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.187

98.165

0.394
  degU Bacillus subtilis subsp. subtilis str. 168

37.946

100

0.39