Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG230_RS28950 Genome accession   NZ_CP108101
Coordinates   6588807..6589439 (-) Length   210 a.a.
NCBI ID   WP_328906672.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6583807..6594439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS28930 (OG230_28930) - 6584422..6585699 (+) 1278 WP_328906668.1 extracellular solute-binding protein -
  OG230_RS28935 (OG230_28935) aceB 6585764..6587383 (-) 1620 WP_328906669.1 malate synthase A -
  OG230_RS28940 (OG230_28940) - 6587675..6588280 (-) 606 WP_328906670.1 nucleotidyltransferase family protein -
  OG230_RS28945 (OG230_28945) - 6588471..6588785 (+) 315 WP_328906671.1 DUF5955 family protein -
  OG230_RS28950 (OG230_28950) vraR 6588807..6589439 (-) 633 WP_328906672.1 response regulator transcription factor Regulator
  OG230_RS28955 (OG230_28955) - 6589436..6590632 (-) 1197 WP_328906673.1 sensor histidine kinase -
  OG230_RS28960 (OG230_28960) - 6590743..6591831 (+) 1089 WP_328906674.1 ABC transporter permease -
  OG230_RS28965 (OG230_28965) - 6591828..6592517 (+) 690 WP_328906675.1 ABC transporter ATP-binding protein -
  OG230_RS28970 (OG230_28970) - 6592580..6593380 (-) 801 WP_185297506.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22017.25 Da        Isoelectric Point: 6.6510

>NTDB_id=653718 OG230_RS28950 WP_328906672.1 6588807..6589439(-) (vraR) [Streptomyces sp. NBC_00234]
MSTPIRLLLADDHPVVRAGLRAVLDTEPDFRVAAEAATAEEAVALAATGSFDVVLMDLQFGAGMHGSEATAAITASPGAP
RVLILTTYDSDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGRSALAPAVAHRLMDRMRTPSEALTKRELEVLQLVG
EGLSNQQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLIRR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=653718 OG230_RS28950 WP_328906672.1 6588807..6589439(-) (vraR) [Streptomyces sp. NBC_00234]
ATGAGCACACCGATCCGTCTGCTGCTGGCCGACGACCATCCGGTCGTACGGGCGGGGCTGCGCGCCGTCCTCGACACGGA
ACCGGACTTCCGGGTCGCGGCCGAGGCGGCGACCGCCGAGGAGGCCGTGGCCCTGGCCGCCACCGGCTCGTTCGACGTGG
TCCTGATGGACCTGCAGTTCGGTGCGGGGATGCACGGCTCGGAGGCGACGGCCGCGATCACCGCGTCACCGGGCGCCCCC
CGGGTGCTGATCCTCACCACGTACGACTCCGACGCCGACATCCTGGCCGCCGTGGAGGCGGGCGCGAGCGGCTATCTGCT
CAAGGACGCGCCGCCGGAGGAACTGGCCGCGGCGGTCCGTACGGCAGCGGCCGGCCGCTCGGCGCTCGCCCCGGCGGTCG
CCCACCGGCTGATGGACCGGATGAGGACGCCTTCGGAGGCGCTGACCAAGCGCGAGCTGGAGGTGCTCCAGCTCGTGGGC
GAGGGACTGTCGAACCAGCAGATCAGCAAGCGGCTGTTCCTGAGCCAGGCGACGGTGAAGTCCCATCTGGTGCACATCTA
CGCCAAGCTGGGCGTGGATTCACGGACCTCGGCGGTGGCCGCGGCGACCGCACGCCGCCTGATCCGCCGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(147-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.5

99.048

0.371
  degU Bacillus subtilis subsp. subtilis str. 168

35

100

0.367