Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG230_RS24720 Genome accession   NZ_CP108101
Coordinates   5581757..5582407 (-) Length   216 a.a.
NCBI ID   WP_328905916.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5576757..5587407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS24700 (OG230_24700) atpD 5577061..5578503 (+) 1443 WP_328905912.1 F0F1 ATP synthase subunit beta -
  OG230_RS24705 (OG230_24705) - 5578613..5578987 (+) 375 WP_328905913.1 F0F1 ATP synthase subunit epsilon -
  OG230_RS24710 (OG230_24710) - 5579120..5579566 (+) 447 WP_328905914.1 DUF2550 domain-containing protein -
  OG230_RS24715 (OG230_24715) - 5579710..5581587 (-) 1878 WP_328905915.1 glycoside hydrolase family 18 chitinase -
  OG230_RS24720 (OG230_24720) vraR 5581757..5582407 (-) 651 WP_328905916.1 response regulator transcription factor Regulator
  OG230_RS24725 (OG230_24725) - 5582404..5583600 (-) 1197 WP_328905917.1 histidine kinase -
  OG230_RS24730 (OG230_24730) - 5583752..5584360 (+) 609 WP_328905918.1 hypothetical protein -
  OG230_RS24735 (OG230_24735) - 5584364..5584936 (-) 573 WP_328905919.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OG230_RS24740 (OG230_24740) - 5585137..5585985 (+) 849 WP_328905920.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  OG230_RS24745 (OG230_24745) - 5586217..5586540 (+) 324 WP_003966237.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22874.39 Da        Isoelectric Point: 4.8419

>NTDB_id=653703 OG230_RS24720 WP_328905916.1 5581757..5582407(-) (vraR) [Streptomyces sp. NBC_00234]
MTIRVLVAEDQSAVRAGLVLILGSAPDIEVVGEAGDGEAAVRLARELRPDVVLMDVQMPRLDGVSATREVVAEQLADVLV
LTTFDLDEYVFGALRAGAAGFLLKNTDAHDLLQAVRTVARGEGLIAPAVTRRLIAEFAGATPARRPDTPPPAGLESLTRR
EREVLGCLGEGLSNAEIAVRLSMAEATVKTHVSRLLGKLELRSRAQAAVIAQELGI

Nucleotide


Download         Length: 651 bp        

>NTDB_id=653703 OG230_RS24720 WP_328905916.1 5581757..5582407(-) (vraR) [Streptomyces sp. NBC_00234]
ATGACGATCCGGGTACTGGTCGCCGAGGACCAGTCGGCGGTACGCGCGGGACTGGTGCTGATTCTCGGCAGCGCACCGGA
CATCGAGGTCGTCGGGGAAGCGGGCGACGGCGAGGCCGCGGTGCGACTGGCACGCGAACTGCGCCCGGACGTCGTGCTGA
TGGATGTGCAGATGCCTCGGCTCGACGGGGTGTCGGCGACCCGCGAGGTGGTGGCGGAGCAGCTCGCGGACGTGCTGGTG
CTGACGACGTTCGATCTGGACGAGTACGTCTTCGGGGCGCTGCGGGCCGGGGCTGCGGGCTTTCTGCTGAAGAACACCGA
TGCGCACGATCTGCTCCAAGCGGTACGGACCGTGGCGCGCGGCGAGGGACTGATCGCCCCGGCGGTGACGCGTCGGCTGA
TCGCGGAGTTCGCCGGAGCCACCCCCGCACGCCGGCCGGACACACCTCCTCCGGCGGGGCTGGAATCGCTCACGCGGCGG
GAGCGCGAGGTTCTGGGATGTCTGGGCGAAGGGCTGTCGAACGCGGAGATCGCGGTGCGGCTCTCGATGGCGGAAGCAAC
GGTGAAGACGCACGTCAGCAGGCTGTTGGGGAAGCTGGAGCTGCGGAGCCGGGCCCAAGCAGCGGTGATCGCGCAGGAGT
TGGGCATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(155-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.589

99.074

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

39.462

100

0.407