Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG230_RS19825 Genome accession   NZ_CP108101
Coordinates   4500516..4501154 (-) Length   212 a.a.
NCBI ID   WP_328905054.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4495516..4506154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS19800 (OG230_19810) - 4496273..4496749 (+) 477 WP_328905049.1 GNAT family N-acetyltransferase -
  OG230_RS19805 (OG230_19815) - 4496819..4497820 (-) 1002 WP_328905050.1 zinc-binding dehydrogenase -
  OG230_RS19810 (OG230_19820) - 4497918..4499111 (-) 1194 WP_328905051.1 NAD(P)-binding protein -
  OG230_RS19815 (OG230_19825) - 4499231..4499938 (+) 708 WP_328905052.1 pentapeptide repeat-containing protein -
  OG230_RS19820 (OG230_19830) - 4499960..4500460 (-) 501 WP_328905053.1 hypothetical protein -
  OG230_RS19825 (OG230_19835) vraR 4500516..4501154 (-) 639 WP_328905054.1 response regulator transcription factor Regulator
  OG230_RS19830 (OG230_19840) - 4501151..4502428 (-) 1278 WP_328905055.1 sensor histidine kinase -
  OG230_RS19835 (OG230_19845) - 4502668..4503225 (+) 558 WP_328905056.1 heme-binding protein -
  OG230_RS19840 (OG230_19850) - 4503280..4503885 (+) 606 WP_328905057.1 ankyrin repeat domain-containing protein -
  OG230_RS19845 (OG230_19855) - 4503882..4505045 (+) 1164 WP_328905058.1 beta-propeller fold lactonase family protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 22297.65 Da        Isoelectric Point: 5.1096

>NTDB_id=653694 OG230_RS19825 WP_328905054.1 4500516..4501154(-) (vraR) [Streptomyces sp. NBC_00234]
MTSNVPGSVRILLCDDHAVVRAGLLALLGSEPDIEVVGEAGSGEEAVALAAKLAPDVVLMDLQLGEGIDGVEATRRIAGT
GGVHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIRSAAQGRTTLSPPVASRVMARMRKPLPTLTERELDILG
QLSQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLLP

Nucleotide


Download         Length: 639 bp        

>NTDB_id=653694 OG230_RS19825 WP_328905054.1 4500516..4501154(-) (vraR) [Streptomyces sp. NBC_00234]
ATGACCTCGAACGTCCCCGGATCCGTACGCATCCTGCTCTGCGACGACCACGCCGTCGTACGCGCGGGGCTGCTCGCCCT
GCTCGGCAGCGAACCGGACATCGAGGTCGTCGGCGAGGCGGGCAGCGGCGAGGAAGCCGTCGCGCTGGCCGCCAAACTCG
CCCCGGACGTCGTGCTGATGGACCTGCAGCTGGGCGAGGGCATCGACGGCGTCGAGGCCACCCGCCGCATCGCGGGCACC
GGCGGCGTCCACGTCCTGGTCCTCACCACGTACGACACGGACGCCGACATCACCCGCGCGATCGAGGCGGGCGCCACCGG
CTATCTGCTCAAGGCGGAGCGCCCCGAGGAGCTGTTCGCCGCGATCCGCTCGGCCGCGCAGGGCCGCACGACCCTCTCCC
CGCCGGTCGCCAGCCGGGTCATGGCCCGGATGCGCAAACCGCTGCCGACCCTCACCGAGCGGGAACTCGACATCCTGGGC
CAGCTCTCGCAGGGGCTCGGCAACCGTGACATCGCCCGTGCGCTGTTCATCAGCGAGGCCACGGTCAAGACCCACCTGGG
CCGCATCTACGACAAGCTCGGCGTCGACACCCGGGCGGGCGCGGTCGCCGTGGCGAAGGAACAGCGCCTGCTGCCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(11-123)

Bacterial regulatory proteins, luxR family (GerE)

(150-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.385

98.113

0.396
  degU Bacillus subtilis subsp. subtilis str. 168

35.616

100

0.368