Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG230_RS16640 Genome accession   NZ_CP108101
Coordinates   3841236..3841898 (-) Length   220 a.a.
NCBI ID   WP_328911005.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3836236..3846898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS16620 (OG230_16625) - 3836565..3837494 (+) 930 WP_328911001.1 ABC transporter ATP-binding protein -
  OG230_RS16625 (OG230_16630) - 3837491..3839092 (+) 1602 WP_328911002.1 ABC transporter permease -
  OG230_RS16630 (OG230_16635) - 3839127..3840332 (-) 1206 WP_328911003.1 cytochrome P450 -
  OG230_RS16635 (OG230_16640) - 3840461..3841204 (+) 744 WP_328911004.1 hypothetical protein -
  OG230_RS16640 (OG230_16645) vraR 3841236..3841898 (-) 663 WP_328911005.1 response regulator transcription factor Regulator
  OG230_RS16645 (OG230_16650) - 3841895..3843226 (-) 1332 WP_328911006.1 histidine kinase -
  OG230_RS16650 (OG230_16655) - 3843323..3844198 (-) 876 WP_328911007.1 alpha/beta hydrolase -
  OG230_RS16655 (OG230_16660) kynU 3844342..3845532 (-) 1191 WP_328911008.1 kynureninase -
  OG230_RS16660 (OG230_16665) - 3845525..3846373 (-) 849 WP_328911009.1 tryptophan 2,3-dioxygenase family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23706.50 Da        Isoelectric Point: 4.8187

>NTDB_id=653688 OG230_RS16640 WP_328911005.1 3841236..3841898(-) (vraR) [Streptomyces sp. NBC_00234]
MNSIRVLIVDDQMMVREGFSVLLNAMPGIEVVGEAVDGRQAVTQVAALRPDVVLMDIRMPELNGIEATREIVAADADAKV
LVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAEAPRSPVLARIGDLTER
ETEVLVLIAQGLSNAEIASRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=653688 OG230_RS16640 WP_328911005.1 3841236..3841898(-) (vraR) [Streptomyces sp. NBC_00234]
ATGAACAGCATCAGGGTGCTGATCGTCGACGACCAGATGATGGTCCGCGAGGGCTTCTCCGTACTCCTCAACGCGATGCC
GGGGATCGAGGTCGTGGGCGAGGCCGTCGACGGACGCCAGGCCGTCACGCAGGTGGCCGCCCTCCGTCCCGACGTCGTGC
TGATGGACATCCGGATGCCGGAGCTCAACGGCATCGAGGCGACCCGCGAGATCGTCGCCGCCGACGCGGACGCCAAGGTA
CTCGTCCTGACCACCTTCGACCTGGACGAGTACGTGTACCAGGCGCTGCGCGCGGGGGCCTCCGGCTTCCTGCTGAAGGA
CGCGTCGGCCCGCCAGCTCGCCGACGGTGTGAGGGTGGTCGCCTCCGGCGAGGCACTGCTCGCGCCGACCGTCACACGGC
GGCTGATCACGGAGTTCTCGAAGCTCGCCGAGGCACCGCGGTCTCCCGTCCTCGCCCGCATCGGCGATCTCACGGAGCGG
GAGACGGAGGTGCTCGTCCTGATCGCGCAGGGACTGTCGAACGCGGAGATCGCCTCGCGCCTGGTGGTCGCCGAGTCCAC
CATCAAGACGCATGTCAGCCGCATTCTCGTGAAGCTGGGGCTGCGGGACCGTACGCAGGCGGCGGTGTTCGCGTACGAGG
CACGCCTCGTCACGCCCGGGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-211)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.721

97.727

0.427
  degU Bacillus subtilis subsp. subtilis str. 168

42.727

100

0.427