Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG230_RS16535 Genome accession   NZ_CP108101
Coordinates   3818676..3819275 (-) Length   199 a.a.
NCBI ID   WP_328910986.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3813676..3824275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS16510 (OG230_16515) - 3813753..3814328 (-) 576 WP_328910981.1 SigE family RNA polymerase sigma factor -
  OG230_RS16515 (OG230_16520) - 3814686..3815750 (-) 1065 WP_328910982.1 aspartate-semialdehyde dehydrogenase -
  OG230_RS16520 (OG230_16525) - 3815747..3817018 (-) 1272 WP_328910983.1 aspartate kinase -
  OG230_RS16525 (OG230_16530) - 3817392..3817802 (+) 411 WP_328910984.1 PPOX class F420-dependent oxidoreductase -
  OG230_RS16530 (OG230_16535) - 3817951..3818610 (-) 660 WP_328910985.1 DUF5063 domain-containing protein -
  OG230_RS16535 (OG230_16540) recR 3818676..3819275 (-) 600 WP_328910986.1 recombination mediator RecR Machinery gene
  OG230_RS16540 (OG230_16545) - 3819354..3819689 (-) 336 WP_328911423.1 YbaB/EbfC family nucleoid-associated protein -
  OG230_RS16545 (OG230_16550) - 3820000..3820788 (+) 789 WP_328910987.1 SLATT domain-containing protein -
  OG230_RS16550 (OG230_16555) - 3820843..3821493 (-) 651 WP_328910988.1 hypothetical protein -
  OG230_RS16555 (OG230_16560) - 3821576..3822313 (-) 738 WP_328910989.1 GntR family transcriptional regulator -
  OG230_RS16560 (OG230_16565) - 3822418..3823782 (-) 1365 WP_328910990.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21917.23 Da        Isoelectric Point: 5.1558

>NTDB_id=653687 OG230_RS16535 WP_328910986.1 3818676..3819275(-) (recR) [Streptomyces sp. NBC_00234]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCSVCGNVAQQEQCNICRDTRRDLTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=653687 OG230_RS16535 WP_328910986.1 3818676..3819275(-) (recR) [Streptomyces sp. NBC_00234]
GTGTACGAAGGCGTTGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTTCACATCCTGCAGGCCGAGCCCACCGACGTACGCCGCCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGTTCGGTGTGCGGCAACGTCGCGCAGCAGGAGCAGTGCAACATCTGCCGGGACACCCGCCGCGATCTGACGGTC
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCCGATACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGTCCCGACGATCTGCGTATCCGCGAGCTGCTGGCCCGGCTCGCGGACGGCT
CCATCACGGAGCTGATCCTGGCGACGGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGCCTGAGGGTGACCCGGCTGGCCAGCGGCCTGCCCGTGGGCGGCGACCTCGAGTACGCGGACGAGGTCACCCT
GGGCCGCGCGTTCGAAGGCAGGCGACTCCTGGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457