Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG230_RS15755 Genome accession   NZ_CP108101
Coordinates   3648465..3649877 (+) Length   470 a.a.
NCBI ID   WP_328910847.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3643465..3654877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS15735 (OG230_15735) - 3643549..3644361 (-) 813 WP_328911414.1 sugar phosphate isomerase/epimerase -
  OG230_RS15740 (OG230_15740) - 3644499..3645446 (-) 948 WP_328910844.1 Ppx/GppA phosphatase family protein -
  OG230_RS15745 (OG230_15745) - 3645487..3646329 (+) 843 WP_328910845.1 hypothetical protein -
  OG230_RS15750 (OG230_15750) - 3646466..3648343 (-) 1878 WP_328910846.1 hypothetical protein -
  OG230_RS15755 (OG230_15755) radA/sms 3648465..3649877 (+) 1413 WP_328910847.1 DNA repair protein RadA Machinery gene
  OG230_RS15760 (OG230_15760) disA 3649958..3651082 (+) 1125 WP_328910848.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG230_RS15765 (OG230_15765) - 3651183..3651983 (-) 801 WP_328911415.1 hypothetical protein -
  OG230_RS15770 (OG230_15770) - 3652213..3653115 (+) 903 WP_328910849.1 A/G-specific adenine glycosylase -
  OG230_RS15775 (OG230_15775) - 3653286..3653906 (+) 621 WP_328910850.1 SigE family RNA polymerase sigma factor -
  OG230_RS15780 (OG230_15780) - 3653999..3654634 (+) 636 WP_328911416.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49435.53 Da        Isoelectric Point: 8.2508

>NTDB_id=653682 OG230_RS15755 WP_328910847.1 3648465..3649877(+) (radA/sms) [Streptomyces sp. NBC_00234]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAAVPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRMRADRIKAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDAPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFTHALVPSDPGKVPAGMKVTEVADMGDALRVLPRRSRQDGPQEDNARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=653682 OG230_RS15755 WP_328910847.1 3648465..3649877(+) (radA/sms) [Streptomyces sp. NBC_00234]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGTTGCCCCGAATGCCAGGCATGGGGGACGGTCGAGGAGTTCGGCGGTGCCCCCGCCGTGCGGACGACGGCCGCGG
GCCGGGTCTCCACCGCCGCCGTCCCCATCGGCCAGGTCGACAGCCGCCAGGCCACCGCCCGCTCGACCGGCGTGGGTGAG
CTCGACCGCGTCCTGGGCGGAGGTCTCGTGCCGGGCGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGGAAGTCGAC
GCTGCTGCTGGACGTCGCCGCCAAGGCGGCGAGCGACGACCACCGCACGCTGTACGTCACGGCCGAGGAGTCCGCGAGCC
AGGTCCGGATGCGCGCCGACCGGATCAAGGCGATCAACGACCACCTCTACCTCGCGGCGGAGACCGATCTGTCCGCGGTG
CTCGGCCATCTGGACGCGGTCAAGCCGTCCCTTCTCGTCCTCGACTCCGTACAGACCGTGGCCTCGCCCGAGATCGAGGG
GGCGCCCGGTGGCATGGCCCAGGTCCGGGAGGTGGCCGGAGCGCTCATCCGGGCCTCCAAGGAGCGCGGCATGGCCACGC
TGCTGGTCGGCCACGTCACCAAGGACGGCGCGATCGCCGGGCCCCGGCTCCTGGAGCACCTCGTCGACGTGGTGCTGTCG
TTCGAGGGCGACCGCCATGCCCGTCTCCGTCTCGTCCGCGGCGTCAAGAACCGGTACGGGGCGACGGACGAGGTGGGCTG
TTTCGAGCTCCACGACGAGGGGATCACGGGCCTCGCCGATCCCTCGGGCCTCTTCCTCACCCGTCGTGACGCACCGGTTC
CCGGCACCTGCCTGACGGTCACACTGGAGGGCAAGCGGCCCCTCGTCGCCGAAGTGCAGGCGCTGACGGTCGATTCGCAG
ATCCCCTCGCCCCGGCGCACGACCTCCGGGCTGGAGACCTCCCGGGTGTCGATGATGCTGGCGGTGCTGGAGCAGCGGGG
GCGGATCAGCGCCCTCGGAAAGCGGGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTGACCGAGCCCGCCGCGGACC
TGGCGATCGCCCTCGCGCTGGCCAGCGCGGCGAGCGACACCCCGCTCCCCAAGAACCTGGTCGCGATCGGCGAAGTGGGC
CTTGCGGGCGAGGTCAGGCGGGTGACGGGGGTGCAGCGCAGGCTGGCCGAGGCGTACCGCCTGGGGTTCACCCACGCACT
CGTGCCGAGCGACCCGGGGAAGGTGCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGCGACGCCCTCAGAGTGC
TCCCGCGCCGGTCTCGTCAGGACGGACCACAGGAGGACAATGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.383

0.423
  radA Streptococcus pneumoniae Rx1

42.384

96.383

0.409
  radA Streptococcus pneumoniae D39

42.384

96.383

0.409
  radA Streptococcus pneumoniae R6

42.384

96.383

0.409
  radA Streptococcus pneumoniae TIGR4

42.384

96.383

0.409
  radA Streptococcus mitis SK321

43.823

91.277

0.4
  radA Streptococcus mitis NCTC 12261

43.823

91.277

0.4