Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L6466_RS09610 Genome accession   NZ_CP091794
Coordinates   2352817..2354208 (+) Length   463 a.a.
NCBI ID   WP_091815986.1    Uniprot ID   -
Organism   Prevotella communis strain E15-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2347817..2359208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6466_RS09595 (L6466_09595) - 2348295..2349548 (+) 1254 WP_237803544.1 phospholipase D-like domain-containing protein -
  L6466_RS09600 (L6466_09600) - 2349545..2351743 (-) 2199 WP_237812915.1 hypothetical protein -
  L6466_RS09605 (L6466_09605) - 2351763..2352680 (-) 918 WP_091851703.1 ABC transporter substrate-binding protein -
  L6466_RS09610 (L6466_09610) radA 2352817..2354208 (+) 1392 WP_091815986.1 DNA repair protein RadA Machinery gene
  L6466_RS09615 (L6466_09615) - 2354221..2356671 (-) 2451 WP_237803067.1 AraC family transcriptional regulator -
  L6466_RS09625 (L6466_09625) - 2356934..2358121 (-) 1188 WP_091815992.1 pyridoxal phosphate-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 51020.66 Da        Isoelectric Point: 6.9176

>NTDB_id=653683 L6466_RS09610 WP_091815986.1 2352817..2354208(+) (radA) [Prevotella communis strain E15-14]
MAKDKTAYVCENCGQESAKWIGKCPSCGRWNTFKEIKLSTDNVRQSATSAAAKTGHALRTNRIMRLSEISSHDEKRIDMH
DEELNRVLGGGLVPGSIVLLGGEPGIGKSTLSLQTMLRLTDKRILYVSGEESAHQLKMRAERILNGQPNPENFMILCENA
LEHIFEHIKEEQPDLVVVDSIQTIATEDVESSAGSVAQVRECAAALLRFAKTSGVPVILIGHITKEGTLAGPKVLEHIVD
TVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMLQNGLRQVNNPSELLLTQDHEGLSGIAISSAIEGVRPFLLETQALV
SSAAYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFVNIAGGLRVTDLAMDLSVIAAVLSSNVDTPIEPGWCMAG
EVGLSGEVRPVNRIDQRIAEAEKLGFQHIIIPRYNMQGLNTKKYKIEIHPVRKVEEALRALFG

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=653683 L6466_RS09610 WP_091815986.1 2352817..2354208(+) (radA) [Prevotella communis strain E15-14]
ATGGCAAAGGACAAGACAGCATACGTCTGCGAGAACTGCGGACAAGAATCAGCAAAATGGATTGGAAAGTGTCCGTCTTG
CGGACGGTGGAACACATTCAAGGAAATCAAGCTCAGTACTGACAACGTCAGACAGAGTGCCACCTCCGCCGCAGCCAAGA
CAGGTCATGCCCTACGCACCAACCGCATCATGAGACTCAGCGAGATAAGCAGTCATGACGAGAAACGTATCGATATGCAT
GACGAAGAGCTGAACCGCGTTCTTGGAGGTGGTCTGGTACCAGGCAGTATCGTACTGCTTGGCGGCGAACCTGGAATCGG
AAAATCCACGCTGTCATTACAGACCATGCTCCGTCTTACCGACAAGCGCATTCTCTACGTCAGTGGTGAGGAAAGTGCCC
ACCAGTTGAAGATGCGTGCAGAGCGCATCTTAAACGGACAGCCCAATCCAGAGAACTTTATGATTCTGTGCGAGAACGCA
CTGGAACATATCTTTGAACATATCAAAGAAGAACAACCAGACCTGGTTGTTGTTGACTCCATACAGACCATTGCCACTGA
GGATGTTGAGTCAAGTGCCGGCTCCGTGGCTCAGGTACGTGAGTGTGCTGCTGCATTATTGCGATTTGCCAAGACAAGTG
GCGTACCTGTCATCCTGATTGGACATATCACAAAGGAAGGTACACTGGCAGGTCCAAAGGTGTTGGAACATATCGTTGAC
ACCGTCATTCAGTTTGAGGGCGACCAGCATTATATGTATCGTATCCTGAGAAGTATCAAGAATCGTTTTGGAAGCACATC
AGAACTAGGTATCTACGAGATGCTGCAAAACGGCCTCAGACAGGTGAACAACCCATCAGAACTTCTGCTCACACAAGACC
ACGAAGGCCTGTCCGGCATTGCCATCTCCAGTGCCATTGAAGGTGTACGTCCGTTCCTGCTTGAGACCCAGGCCCTTGTA
TCATCAGCAGCCTATGGCACCCCACAACGTTCGGCCACAGGTTTTGATCAGCGCCGATTGAATATGCTGCTGGCTGTCCT
GGAAAAACGCGTAGGATTCAAACTGATGCAGAAAGATGTCTTTGTGAATATCGCTGGCGGACTGAGGGTTACAGACTTGG
CTATGGACCTATCCGTCATTGCTGCCGTACTCTCGTCAAATGTTGACACACCCATCGAACCAGGCTGGTGCATGGCCGGC
GAGGTAGGATTAAGTGGTGAGGTGCGACCTGTCAATCGTATTGACCAACGTATTGCCGAGGCAGAGAAATTAGGATTCCA
GCACATCATCATCCCTCGCTATAACATGCAAGGTCTCAACACAAAGAAATACAAGATTGAGATTCATCCCGTCAGGAAAG
TGGAAGAAGCCCTCCGTGCCCTATTCGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-227)

Subunit ChlI of Mg-chelatase (ChlI)

(349-435)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.283

100

0.486
  radA Streptococcus pneumoniae Rx1

45.806

100

0.46
  radA Streptococcus pneumoniae D39

45.806

100

0.46
  radA Streptococcus pneumoniae R6

45.806

100

0.46
  radA Streptococcus pneumoniae TIGR4

45.806

100

0.46
  radA Streptococcus mitis NCTC 12261

45.806

100

0.46
  radA Streptococcus mitis SK321

45.806

100

0.46