Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L6476_RS04945 Genome accession   NZ_CP091790
Coordinates   1262017..1263408 (-) Length   463 a.a.
NCBI ID   WP_091815986.1    Uniprot ID   -
Organism   Prevotella communis strain E13-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1257017..1268408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6476_RS04930 (L6476_04930) - 1258104..1259291 (+) 1188 WP_091815992.1 pyridoxal phosphate-dependent aminotransferase family protein -
  L6476_RS04940 (L6476_04940) - 1259554..1262004 (+) 2451 WP_237803067.1 AraC family transcriptional regulator -
  L6476_RS04945 (L6476_04945) radA 1262017..1263408 (-) 1392 WP_091815986.1 DNA repair protein RadA Machinery gene
  L6476_RS04950 (L6476_04950) - 1263545..1264462 (+) 918 WP_237835339.1 ABC transporter substrate-binding protein -
  L6476_RS04955 (L6476_04955) - 1264482..1266680 (+) 2199 WP_237835340.1 hypothetical protein -
  L6476_RS04960 (L6476_04960) - 1266677..1267930 (-) 1254 WP_237803544.1 phospholipase D-like domain-containing protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 51020.66 Da        Isoelectric Point: 6.9176

>NTDB_id=653665 L6476_RS04945 WP_091815986.1 1262017..1263408(-) (radA) [Prevotella communis strain E13-3]
MAKDKTAYVCENCGQESAKWIGKCPSCGRWNTFKEIKLSTDNVRQSATSAAAKTGHALRTNRIMRLSEISSHDEKRIDMH
DEELNRVLGGGLVPGSIVLLGGEPGIGKSTLSLQTMLRLTDKRILYVSGEESAHQLKMRAERILNGQPNPENFMILCENA
LEHIFEHIKEEQPDLVVVDSIQTIATEDVESSAGSVAQVRECAAALLRFAKTSGVPVILIGHITKEGTLAGPKVLEHIVD
TVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMLQNGLRQVNNPSELLLTQDHEGLSGIAISSAIEGVRPFLLETQALV
SSAAYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFVNIAGGLRVTDLAMDLSVIAAVLSSNVDTPIEPGWCMAG
EVGLSGEVRPVNRIDQRIAEAEKLGFQHIIIPRYNMQGLNTKKYKIEIHPVRKVEEALRALFG

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=653665 L6476_RS04945 WP_091815986.1 1262017..1263408(-) (radA) [Prevotella communis strain E13-3]
ATGGCAAAGGACAAGACAGCATACGTCTGCGAGAACTGCGGACAAGAATCAGCAAAATGGATTGGAAAGTGTCCGTCTTG
CGGACGGTGGAACACATTCAAGGAAATCAAGCTCAGTACTGACAACGTCAGACAGAGTGCCACCTCCGCCGCAGCCAAGA
CAGGTCATGCCCTACGCACCAACCGCATCATGAGACTCAGCGAGATAAGCAGTCATGACGAGAAACGTATCGATATGCAT
GACGAAGAGCTGAACCGCGTTCTTGGAGGTGGTCTGGTACCAGGCAGTATCGTACTGCTTGGCGGCGAACCTGGAATCGG
AAAATCCACGCTGTCATTACAGACCATGCTCCGTCTTACCGACAAACGCATTCTCTACGTCAGTGGTGAGGAAAGTGCCC
ACCAGTTGAAGATGCGTGCAGAGCGCATCTTAAACGGACAGCCCAATCCAGAGAACTTTATGATTCTGTGCGAGAACGCA
CTGGAACATATCTTTGAACATATCAAGGAAGAACAACCAGACCTGGTTGTTGTTGACTCCATACAGACCATTGCCACTGA
GGATGTTGAGTCAAGTGCCGGCTCCGTGGCTCAGGTACGTGAGTGTGCTGCTGCATTATTGCGATTTGCCAAGACAAGTG
GCGTACCAGTCATCCTGATTGGACATATCACAAAGGAAGGTACACTGGCAGGTCCAAAGGTGTTGGAACATATCGTTGAC
ACCGTCATTCAGTTTGAGGGCGACCAGCATTATATGTATCGTATCCTGAGAAGTATCAAGAATCGTTTTGGAAGTACATC
AGAACTAGGTATCTACGAGATGCTGCAAAACGGCCTCAGACAGGTGAACAACCCATCAGAACTTCTGCTCACACAAGACC
ACGAAGGCCTGTCCGGCATTGCCATCTCCAGTGCCATTGAAGGTGTACGTCCGTTCCTGCTTGAGACCCAGGCCCTTGTC
TCATCAGCAGCCTATGGCACCCCACAACGTTCGGCCACAGGTTTTGATCAGCGCCGATTGAATATGCTGCTGGCTGTCCT
GGAAAAACGCGTAGGATTCAAACTGATGCAGAAGGATGTCTTTGTGAATATCGCTGGCGGACTGAGGGTTACAGACTTGG
CTATGGACCTATCCGTCATTGCTGCCGTACTCTCGTCAAATGTTGACACACCCATCGAACCAGGCTGGTGCATGGCCGGC
GAGGTAGGATTAAGTGGTGAGGTGCGACCTGTCAATCGTATTGACCAACGTATTGCCGAGGCAGAGAAATTAGGATTCCA
GCACATCATCATCCCTCGCTATAACATGCAAGGTCTCAACACAAAGAAATACAAGATTGAGATTCATCCCGTCAGGAAAG
TGGAAGAAGCCCTCCGTGCCCTATTCGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-227)

Subunit ChlI of Mg-chelatase (ChlI)

(349-435)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.283

100

0.486
  radA Streptococcus pneumoniae Rx1

45.806

100

0.46
  radA Streptococcus pneumoniae D39

45.806

100

0.46
  radA Streptococcus pneumoniae R6

45.806

100

0.46
  radA Streptococcus pneumoniae TIGR4

45.806

100

0.46
  radA Streptococcus mitis NCTC 12261

45.806

100

0.46
  radA Streptococcus mitis SK321

45.806

100

0.46