Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG230_RS07760 Genome accession   NZ_CP108101
Coordinates   1794718..1795362 (-) Length   214 a.a.
NCBI ID   WP_328909385.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1789718..1800362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS07730 (OG230_07730) - 1789886..1790659 (-) 774 WP_328909380.1 sulfite exporter TauE/SafE family protein -
  OG230_RS07735 (OG230_07735) - 1790738..1791676 (-) 939 WP_328909381.1 SPFH domain-containing protein -
  OG230_RS07740 (OG230_07740) - 1791805..1792233 (-) 429 WP_328909382.1 NfeD family protein -
  OG230_RS07745 (OG230_07745) - 1792312..1793109 (-) 798 WP_328909383.1 ABC transporter ATP-binding protein -
  OG230_RS07750 (OG230_07750) - 1793255..1794043 (+) 789 WP_328909384.1 hypothetical protein -
  OG230_RS07755 (OG230_07755) - 1794323..1794571 (-) 249 WP_328911339.1 chaplin -
  OG230_RS07760 (OG230_07760) vraR 1794718..1795362 (-) 645 WP_328909385.1 response regulator transcription factor Regulator
  OG230_RS07765 (OG230_07765) - 1795355..1796500 (-) 1146 WP_328909386.1 GAF domain-containing sensor histidine kinase -
  OG230_RS07770 (OG230_07770) - 1796742..1797452 (+) 711 WP_328909387.1 SDR family oxidoreductase -
  OG230_RS07775 (OG230_07775) - 1797449..1798519 (+) 1071 WP_328909388.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG230_RS07780 (OG230_07780) - 1798808..1799554 (+) 747 WP_328909389.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22899.17 Da        Isoelectric Point: 5.6792

>NTDB_id=653665 OG230_RS07760 WP_328909385.1 1794718..1795362(-) (vraR) [Streptomyces sp. NBC_00234]
MADKTIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVARTEELRPDVVLMDIKMPGTDGIEALRKLRELANPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQDDAGSGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=653665 OG230_RS07760 WP_328909385.1 1794718..1795362(-) (vraR) [Streptomyces sp. NBC_00234]
GTGGCTGACAAGACCATCAAGGTGCTGCTGGTCGACGACCACCAGGTGGTACGCCGGGGGCTGCGCACGTTCCTGGAGGT
CCAGGACGACATAGAGGTCGTCGGAGAGGCCGCGGACGGCGCCGAGGGCGTCGCCCGCACCGAGGAGCTGCGCCCCGACG
TCGTCCTGATGGACATCAAGATGCCCGGCACGGACGGCATCGAGGCCCTGCGCAAACTCCGCGAGCTGGCCAATCCGGCC
AAGGTGCTGATCGTCACCAGCTTCACCGAACAGCGCACGGTCGTCCCGGCACTGCGCGCCGGAGCCTCCGGTTACGTGTA
CAAGGACGTCGACCCGGACGCCCTGGCCGGAGCCATCCGCTCGGTCCACGCCGGTCACGTACTGCTCCAGCCCGAGGTGG
CCGGGGCCCTCCTGGCCCAGGACGACGCGGGCAGCGGTACGGGCCGCGGGAGCACCCTCACCGAACGGGAACGTGAAGTG
CTCGGCCTGATCGCGGACGGCCGCTCCAACCGGGAGATCGCCAGGGCGCTGGTCCTCTCGGAGAAGACGGTCAAGACCCA
CGTGTCGAACATCCTTATGAAGCTGGACCTGGCGGACCGCACCCAGGCGGCATTGTGGGCCGTCAGGCACGGTGCGGCCG
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.894

96.729

0.444
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407