Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG230_RS06340 Genome accession   NZ_CP108101
Coordinates   1480771..1481439 (-) Length   222 a.a.
NCBI ID   WP_328909138.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1475771..1486439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS06320 (OG230_06315) argC 1476453..1477481 (-) 1029 WP_328909135.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  OG230_RS06325 (OG230_06320) - 1477769..1478374 (+) 606 WP_328909136.1 dihydrofolate reductase family protein -
  OG230_RS06330 (OG230_06325) - 1478632..1479150 (+) 519 WP_328909137.1 hypothetical protein -
  OG230_RS06335 (OG230_06330) rox 1479257..1480729 (+) 1473 WP_328911318.1 rifampin monooxygenase -
  OG230_RS06340 (OG230_06335) vraR 1480771..1481439 (-) 669 WP_328909138.1 response regulator transcription factor Regulator
  OG230_RS06345 (OG230_06340) - 1481436..1482650 (-) 1215 WP_328911319.1 sensor histidine kinase -
  OG230_RS06350 (OG230_06345) - 1482739..1483899 (-) 1161 WP_328909139.1 acyltransferase -
  OG230_RS06355 (OG230_06350) - 1483892..1484860 (-) 969 WP_328909140.1 alpha/beta hydrolase -
  OG230_RS06360 (OG230_06355) - 1485209..1486360 (-) 1152 WP_328909141.1 serine hydrolase domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23849.67 Da        Isoelectric Point: 5.6578

>NTDB_id=653663 OG230_RS06340 WP_328909138.1 1480771..1481439(-) (vraR) [Streptomyces sp. NBC_00234]
MTIRVLIVDDQMMVRQGFTVLLDAEPGIEVVGQAVDGLDAVAKVAELAPDVVLMDIRMPGLGGIEATRRLTAPHDATVKV
LVLTTFDLDEYVYEALRAGASGFLLKDASAAELAHAVRVVAAGDALLAPNITKRLIAEYSRLADAPRAPLKERLGDLTQR
ETEVLSLIAHGLSNAEIAVRLVVAEQTVKTHVSRILVKLSLRDRTQAAVHAYETGLVRPAGY

Nucleotide


Download         Length: 669 bp        

>NTDB_id=653663 OG230_RS06340 WP_328909138.1 1480771..1481439(-) (vraR) [Streptomyces sp. NBC_00234]
ATGACCATCCGTGTGCTGATCGTCGACGACCAGATGATGGTCCGGCAGGGCTTCACGGTGCTGCTCGACGCCGAGCCGGG
CATCGAGGTCGTCGGTCAGGCCGTGGACGGCCTCGACGCCGTCGCCAAGGTCGCCGAACTGGCCCCCGACGTCGTCCTGA
TGGACATCCGAATGCCCGGACTCGGCGGCATCGAGGCGACCCGCCGCCTCACCGCGCCGCACGACGCCACCGTCAAGGTC
CTCGTCCTGACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGCGCGGGCGCGTCCGGCTTCCTGCTGAAGGA
CGCGTCGGCGGCCGAACTGGCCCACGCGGTACGGGTCGTTGCGGCCGGAGACGCCCTGCTCGCCCCGAACATCACCAAGC
GGCTGATCGCCGAGTACTCCCGGCTGGCCGACGCCCCGCGCGCCCCCCTCAAGGAGCGCCTCGGGGACCTGACGCAGCGC
GAGACGGAGGTGCTGTCGCTGATCGCGCACGGGCTGTCGAACGCGGAGATAGCGGTCCGCCTGGTCGTCGCCGAACAGAC
GGTGAAGACCCACGTGAGCCGGATTCTCGTCAAGCTCTCCCTGCGCGACCGGACCCAGGCGGCGGTCCACGCGTACGAGA
CCGGACTCGTACGCCCGGCCGGGTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-211)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.091

99.099

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

41.964

100

0.423