Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   SUTH_RS17275 Genome accession   NZ_AP012547
Coordinates   3643942..3645393 (+) Length   483 a.a.
NCBI ID   WP_041101028.1    Uniprot ID   W0SKB6
Organism   Sulfuritalea hydrogenivorans sk43H strain DSM 22779     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3638942..3650393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUTH_RS17240 (SUTH_03463) nusB 3639116..3639550 (+) 435 WP_041101016.1 transcription antitermination factor NusB -
  SUTH_RS17245 (SUTH_03464) thiL 3639567..3640529 (+) 963 WP_041101017.1 thiamine-phosphate kinase -
  SUTH_RS17250 (SUTH_03465) - 3640540..3641037 (+) 498 WP_231851063.1 phosphatidylglycerophosphatase A -
  SUTH_RS17255 (SUTH_03466) - 3641037..3641528 (+) 492 WP_041101019.1 CinA family protein -
  SUTH_RS17260 (SUTH_03467) recA 3641597..3642619 (+) 1023 WP_041101021.1 recombinase RecA Machinery gene
  SUTH_RS17265 (SUTH_03468) - 3642627..3643073 (+) 447 WP_041101024.1 regulatory protein RecX -
  SUTH_RS17270 (SUTH_03469) lptB 3643186..3643923 (+) 738 WP_041101026.1 LPS export ABC transporter ATP-binding protein -
  SUTH_RS17275 (SUTH_03470) rpoN/rpoN1 3643942..3645393 (+) 1452 WP_041101028.1 RNA polymerase factor sigma-54 Machinery gene
  SUTH_RS17280 (SUTH_03471) hpf 3645420..3645734 (+) 315 WP_041101030.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SUTH_RS17285 (SUTH_03472) ptsN 3645878..3646336 (+) 459 WP_041101032.1 PTS IIA-like nitrogen regulatory protein PtsN -
  SUTH_RS17290 (SUTH_03473) hprK 3646321..3647274 (+) 954 WP_041101034.1 HPr(Ser) kinase/phosphatase -
  SUTH_RS17295 (SUTH_03474) - 3647349..3647726 (+) 378 WP_041101036.1 hypothetical protein -
  SUTH_RS17300 (SUTH_03475) - 3647856..3648101 (+) 246 WP_041101038.1 hypothetical protein -
  SUTH_RS17305 (SUTH_03476) - 3648157..3648714 (+) 558 WP_041101040.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 53286.25 Da        Isoelectric Point: 5.0809

>NTDB_id=65366 SUTH_RS17275 WP_041101028.1 3643942..3645393(+) (rpoN/rpoN1) [Sulfuritalea hydrogenivorans sk43H strain DSM 22779]
MRQGLQLRLSQHLALTPQLQQSIRLLQLSTLELNAEIDQALQDNPLLERDEPEEPAFNPSADALATPQTVTPTDSDERLE
PRGGDDEGWGMDFSGSHGQRDPNDDDLDSGESQAASVSLREHLGEQLAMTQLPDRERALAGFLIEALNDDGYLTQPLDEL
IDLLVADEDGNGEVREALLEELGIALRHLQNLDPPGIGARNAQECLALQLNCLPPCATRSLALAIVADHLDHLAARDFAR
IKKSLGCDDDELRLAQTLIRSLNPRPGAQYAPVDTRYVVPDVSVKKLHGQWIVSLNRDAMPRLRINRLYADILNRHRGGN
GSSTGLATQLQEAKWLIKNVQQRFDTILRVSQAIVDRQRAFFDHGEVAMRPLTLREIAETVKLHESTISRVTTQKYLASP
RGVYELKYFFGSHVATDTGGAASSTAIRALIKQLVGAEDGKKPLSDARLAEILGEQGIVVARRTVAKYRELLGIPPVNLR
KAL

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=65366 SUTH_RS17275 WP_041101028.1 3643942..3645393(+) (rpoN/rpoN1) [Sulfuritalea hydrogenivorans sk43H strain DSM 22779]
ATGAGGCAGGGACTCCAGCTCAGGCTCTCGCAGCATCTGGCACTGACGCCGCAGTTGCAGCAGTCGATCAGGCTGTTGCA
GTTGTCGACGCTGGAACTCAATGCCGAGATCGATCAAGCCCTGCAGGACAATCCCCTGCTGGAGCGCGACGAACCCGAAG
AGCCGGCTTTCAATCCCTCGGCAGATGCGCTGGCGACGCCGCAGACCGTCACGCCGACCGACAGCGACGAACGCCTGGAG
CCGCGCGGCGGCGATGATGAAGGTTGGGGCATGGATTTTTCCGGCAGCCACGGCCAGCGCGATCCCAACGATGACGACCT
CGACAGCGGCGAATCCCAGGCCGCGTCCGTTTCGCTGCGCGAGCATCTGGGCGAACAGCTGGCCATGACCCAGTTGCCCG
ACCGCGAACGGGCGCTGGCCGGATTTCTGATCGAAGCCCTGAACGACGACGGCTACCTGACGCAGCCGCTGGACGAATTG
ATCGACCTGCTGGTCGCCGACGAAGATGGCAATGGCGAAGTGCGCGAGGCGCTGCTGGAAGAACTCGGCATCGCCCTGCG
CCATTTGCAGAACCTCGATCCGCCGGGCATCGGCGCGCGCAATGCGCAGGAATGCCTGGCGCTGCAACTCAACTGCCTGC
CGCCTTGCGCGACCCGCAGCCTGGCGCTGGCCATCGTTGCCGATCATCTCGACCACCTCGCTGCGCGCGACTTTGCGCGC
ATCAAAAAGTCGCTGGGCTGCGACGACGACGAACTGCGCCTCGCGCAAACCCTGATCCGCTCGCTGAATCCGCGCCCCGG
CGCGCAGTACGCGCCGGTCGATACGCGCTATGTGGTGCCCGACGTATCGGTGAAAAAGCTGCATGGACAATGGATCGTCA
GCCTCAACCGCGACGCCATGCCGCGCCTGCGCATCAACCGCCTCTACGCCGACATCCTGAACCGCCATCGTGGCGGTAAC
GGCTCGTCCACCGGGCTCGCCACCCAGTTGCAGGAAGCCAAGTGGCTGATCAAGAATGTCCAGCAGCGCTTCGACACCAT
CCTGCGCGTATCGCAGGCCATCGTCGATCGCCAGCGGGCCTTCTTCGACCACGGCGAAGTGGCGATGCGGCCGCTGACCC
TGCGCGAGATCGCAGAGACCGTCAAGCTTCACGAATCGACGATTTCGCGCGTGACGACGCAGAAGTATCTGGCCAGTCCG
CGCGGCGTCTATGAACTCAAATACTTTTTTGGCAGCCACGTCGCCACCGATACCGGCGGCGCGGCTTCCTCAACCGCAAT
TCGGGCGCTGATCAAGCAATTGGTCGGCGCCGAGGACGGCAAGAAGCCGCTCTCGGATGCCCGTCTTGCGGAAATCCTCG
GCGAGCAGGGCATCGTCGTGGCACGTCGCACCGTAGCGAAGTACCGCGAACTGCTCGGCATACCGCCGGTCAACCTCAGA
AAAGCACTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(113-309)

Sigma-54, DNA binding domain (Sigma54_DBD)

(326-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0SKB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

57.874

100

0.609

Multiple sequence alignment