Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG446_RS17275 Genome accession   NZ_CP108100
Coordinates   3860981..3861658 (-) Length   225 a.a.
NCBI ID   WP_328894889.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00236     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3855981..3866658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG446_RS17255 (OG446_17270) - 3856199..3856753 (-) 555 WP_328894885.1 MarR family transcriptional regulator -
  OG446_RS17260 (OG446_17275) - 3856855..3857781 (+) 927 WP_328894886.1 ABC transporter ATP-binding protein -
  OG446_RS17265 (OG446_17280) - 3857778..3859406 (+) 1629 WP_328894887.1 ABC transporter permease -
  OG446_RS17270 (OG446_17285) - 3859483..3860724 (-) 1242 WP_328894888.1 cytochrome P450 -
  OG446_RS17275 (OG446_17290) vraR 3860981..3861658 (-) 678 WP_328894889.1 response regulator transcription factor Regulator
  OG446_RS17280 (OG446_17295) - 3861655..3862968 (-) 1314 WP_328894890.1 histidine kinase -
  OG446_RS17285 (OG446_17300) - 3863078..3863953 (-) 876 WP_328894891.1 alpha/beta hydrolase -
  OG446_RS17290 (OG446_17305) - 3864053..3864637 (-) 585 WP_328894892.1 SUKH-4 family immunity protein -
  OG446_RS17295 (OG446_17310) - 3864532..3865692 (-) 1161 WP_328894893.1 transposase -
  OG446_RS17300 (OG446_17315) - 3865689..3866189 (-) 501 WP_328894894.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24013.86 Da        Isoelectric Point: 4.8093

>NTDB_id=653605 OG446_RS17275 WP_328894889.1 3860981..3861658(-) (vraR) [Streptomyces sp. NBC_00236]
MTAAAGTPIRVLIVDDQMMVREGFSVLLNAMPGIEVVGEAVNGREAVTQVAALRPDVVLMDIRMPELNGIEATREIVAAD
ADAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLAEGVRVVASGEALLAPTVTRRLITEFSKLAAAPRPPALAQMG
DLTERETEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPS

Nucleotide


Download         Length: 678 bp        

>NTDB_id=653605 OG446_RS17275 WP_328894889.1 3860981..3861658(-) (vraR) [Streptomyces sp. NBC_00236]
ATGACGGCCGCCGCCGGTACGCCGATCCGGGTGCTGATCGTCGACGACCAGATGATGGTCCGCGAGGGCTTCTCGGTGCT
GCTGAACGCGATGCCGGGCATCGAGGTCGTCGGCGAGGCCGTCAACGGGCGGGAGGCCGTCACCCAGGTCGCGGCGCTCC
GTCCCGACGTGGTGCTGATGGACATCCGGATGCCGGAGCTCAACGGCATCGAGGCGACCCGCGAGATCGTCGCCGCCGAC
GCGGACGCGAAGGTGCTGGTGCTCACCACGTTCGACCTCGACGAGTACGTCTACCAGGCGCTGCGTGCCGGTGCGTCCGG
ATTCCTCCTCAAGGACGCCTCGGCCCGCCAGCTCGCGGAGGGAGTACGTGTGGTGGCGTCGGGCGAGGCGCTTCTCGCCC
CCACGGTCACCCGACGCCTCATCACCGAGTTCTCCAAGCTCGCGGCGGCCCCGAGGCCGCCGGCGCTCGCCCAGATGGGG
GACCTCACGGAGCGCGAGACGGAAGTGCTCGTCCTGATCGCCCAGGGCCTGTCGAATGCGGAGATCGCCTCGCATCTGGT
GGTCGCCGAGTCCACGATCAAGACCCATGTGAGCCGCATCCTGGTGAAGCTGGGCCTGCGCGACCGCACCCAGGCAGCCG
TATTCGCCTACGAGGCCCGGCTGGTCACGCCGTCGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(162-216)

Response regulator receiver domain (Response_reg)

(11-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.393

95.111

0.422
  degU Bacillus subtilis subsp. subtilis str. 168

43.379

97.333

0.422