Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG446_RS17165 Genome accession   NZ_CP108100
Coordinates   3833780..3834379 (-) Length   199 a.a.
NCBI ID   WP_266780167.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3828780..3839379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG446_RS17135 (OG446_17150) - 3828867..3829442 (-) 576 WP_148019926.1 SigE family RNA polymerase sigma factor -
  OG446_RS17140 (OG446_17155) - 3829802..3830866 (-) 1065 WP_328894867.1 aspartate-semialdehyde dehydrogenase -
  OG446_RS17145 (OG446_17160) - 3830863..3832134 (-) 1272 WP_328894868.1 aspartate kinase -
  OG446_RS17150 (OG446_17165) - 3832519..3832884 (-) 366 WP_328894869.1 hypothetical protein -
  OG446_RS17155 (OG446_17170) - 3832874..3833026 (+) 153 WP_328894870.1 hypothetical protein -
  OG446_RS17160 (OG446_17175) - 3833019..3833678 (-) 660 WP_328894871.1 DUF5063 domain-containing protein -
  OG446_RS17165 (OG446_17180) recR 3833780..3834379 (-) 600 WP_266780167.1 recombination mediator RecR Machinery gene
  OG446_RS17170 (OG446_17185) - 3834483..3834818 (-) 336 WP_148022075.1 YbaB/EbfC family nucleoid-associated protein -
  OG446_RS17175 (OG446_17190) - 3835198..3835992 (+) 795 WP_328894872.1 SLATT domain-containing protein -
  OG446_RS17180 (OG446_17195) - 3836094..3836744 (-) 651 WP_328894873.1 hypothetical protein -
  OG446_RS17185 (OG446_17200) - 3836908..3837672 (-) 765 WP_328894874.1 GntR family transcriptional regulator -
  OG446_RS17190 (OG446_17205) - 3837739..3839100 (-) 1362 WP_328894875.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21884.20 Da        Isoelectric Point: 5.1721

>NTDB_id=653604 OG446_RS17165 WP_266780167.1 3833780..3834379(-) (recR) [Streptomyces sp. NBC_00236]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQQEECGICRDPRRDRTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=653604 OG446_RS17165 WP_266780167.1 3833780..3834379(-) (recR) [Streptomyces sp. NBC_00236]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACGGACGTGCGCCGTCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GCTTCTGCGCCGTCTGCGGCAACGTGGCCCAGCAGGAGGAGTGCGGCATCTGCCGCGACCCGCGCCGCGACCGGACGGTC
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTGGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGCTACCACGTGCTGGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGCCCGGACGATCTGCGCATCCGCGAACTGCTGGCCCGCCTCGCCGACGGCT
CCATCACCGAGCTGATCCTGGCGACCGATCCCAATCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAA
CCGATGGGCCTGCGCGTCACCCGGCTGGCCAGCGGCCTGCCGGTGGGCGGCGACCTGGAGTACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGGCGCCTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457