Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG446_RS06880 Genome accession   NZ_CP108100
Coordinates   1570734..1571378 (-) Length   214 a.a.
NCBI ID   WP_328893176.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00236     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1565734..1576378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG446_RS06850 (OG446_06860) - 1565975..1566742 (-) 768 WP_328893173.1 sulfite exporter TauE/SafE family protein -
  OG446_RS06855 (OG446_06865) - 1566805..1567737 (-) 933 WP_328893174.1 SPFH domain-containing protein -
  OG446_RS06860 (OG446_06870) - 1567891..1568319 (-) 429 WP_148016019.1 NfeD family protein -
  OG446_RS06865 (OG446_06875) - 1568399..1569196 (-) 798 WP_148016018.1 ABC transporter ATP-binding protein -
  OG446_RS06870 (OG446_06880) - 1569395..1570174 (+) 780 WP_328893175.1 hypothetical protein -
  OG446_RS06875 (OG446_06885) - 1570255..1570506 (-) 252 WP_219572718.1 chaplin family protein -
  OG446_RS06880 (OG446_06890) vraR 1570734..1571378 (-) 645 WP_328893176.1 response regulator transcription factor Regulator
  OG446_RS06885 (OG446_06895) - 1571371..1572516 (-) 1146 WP_328893177.1 GAF domain-containing sensor histidine kinase -
  OG446_RS06890 (OG446_06900) - 1572977..1573732 (+) 756 WP_328893178.1 transglycosylase SLT domain-containing protein -
  OG446_RS06895 (OG446_06905) - 1573811..1576357 (-) 2547 WP_328893179.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23149.43 Da        Isoelectric Point: 5.1683

>NTDB_id=653580 OG446_RS06880 WP_328893176.1 1570734..1571378(-) (vraR) [Streptomyces sp. NBC_00236]
MAERLIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEAADGAEGVARTEELRPDVVLMDIKMPGTDGIEALRRLRELENPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVYAGHVLLQPEVAGALLAQDDPGSGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=653580 OG446_RS06880 WP_328893176.1 1570734..1571378(-) (vraR) [Streptomyces sp. NBC_00236]
GTGGCTGAACGGCTCATCAGGGTGCTGCTGGTCGACGACCACCAGGTGGTCCGCCGCGGCCTGCGCACGTTCCTGGAGAT
CCAGGACGACATAGAGGTCGTCGGCGAGGCGGCCGACGGCGCCGAAGGGGTGGCCAGGACGGAGGAGCTGCGGCCCGACG
TGGTGCTGATGGACATCAAGATGCCGGGCACCGACGGCATCGAGGCCCTGCGCAGGCTCCGCGAGCTGGAGAACCCGGCC
AAGGTCCTGATCGTCACCAGCTTCACCGAACAGCGCACCGTCGTCCCGGCCCTGCGCGCCGGTGCGTCCGGCTACGTGTA
CAAGGACGTCGACCCGGACGCGCTGGCCGGCGCCATCCGCTCGGTGTACGCGGGCCATGTCCTGCTCCAGCCCGAAGTGG
CCGGTGCGCTGCTGGCCCAGGACGACCCGGGCAGCGGTACGGGCCGGGGGAGCACCCTCACCGAGCGGGAGCGGGAGGTT
CTGGGCCTGATCGCCGACGGCCGGTCGAACCGGGAGATCGCGCGGGCCCTGGTGCTCTCCGAGAAGACCGTCAAGACACA
TGTCTCGAACATCCTGATGAAGCTGGACCTCTCCGACCGCACCCAGGCAGCGCTCTGGGCCGTCCGGCACGGGGCGGCGG
GCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.146

96.262

0.435
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407