Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG446_RS03540 Genome accession   NZ_CP108100
Coordinates   818784..819434 (+) Length   216 a.a.
NCBI ID   WP_328892638.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00236     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 813784..824434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG446_RS03515 (OG446_03515) - 813794..814447 (-) 654 WP_328892633.1 hypothetical protein -
  OG446_RS03520 (OG446_03520) - 814489..815562 (-) 1074 WP_328892634.1 MerR family transcriptional regulator -
  OG446_RS03525 (OG446_03525) - 815792..816529 (-) 738 WP_328892635.1 ABC transporter permease -
  OG446_RS03530 (OG446_03530) - 816526..817476 (-) 951 WP_328892636.1 ATP-binding cassette domain-containing protein -
  OG446_RS03535 (OG446_03535) - 817583..818779 (+) 1197 WP_328892637.1 histidine kinase -
  OG446_RS03540 (OG446_03540) vraR 818784..819434 (+) 651 WP_328892638.1 response regulator transcription factor Regulator
  OG446_RS03545 (OG446_03545) - 819534..820691 (+) 1158 WP_328892639.1 ROK family transcriptional regulator -
  OG446_RS03550 (OG446_03550) - 820737..821504 (-) 768 WP_328892640.1 GntR family transcriptional regulator -
  OG446_RS03555 (OG446_03555) - 822055..822885 (+) 831 WP_328892641.1 alpha/beta fold hydrolase -
  OG446_RS03560 (OG446_03560) - 822943..823836 (-) 894 Protein_711 DMT family transporter -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23240.96 Da        Isoelectric Point: 4.8664

>NTDB_id=653574 OG446_RS03540 WP_328892638.1 818784..819434(+) (vraR) [Streptomyces sp. NBC_00236]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAGDGAAVIPLVRQLRPDVVAMDVRMPLMDGIEATRVVLRTVPDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAAVRQLAAEYGTNKAREVMERASLTEREEAV
LRLMARGLSNAEIAARLVVGVETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=653574 OG446_RS03540 WP_328892638.1 818784..819434(+) (vraR) [Streptomyces sp. NBC_00236]
ATGCCGGTTACCGTTCTTCTCGTCGACGACGAGCCCCTGGTCCGCGCGGGACTGCGCGCAGTTCTGGAAGCCCAGCCCGA
CATCGAGGTGGTCGGTGAGGCGGGCGACGGCGCCGCGGTGATCCCGTTGGTGCGTCAGCTGCGGCCCGATGTGGTGGCGA
TGGACGTCCGGATGCCGCTCATGGACGGCATCGAGGCGACTCGGGTGGTACTGCGGACCGTGCCCGATCCGCCGAAGATC
CTGGTGGTGACGACGTTCGAGAACGACGAGTACGTCTACGAGGCGTTGCGGGCCGGCGCGGACGGATTTCTCCTCAAGCG
GGCCCGGCCGGCCGAGATCGTGCACGCGGTGCGCCTGGTGGCGGAGGGCGAGTCCTTGCTGTTCCCCGCCGCGGTCCGGC
AGCTGGCAGCCGAATACGGTACGAACAAGGCGCGGGAGGTCATGGAGCGGGCTTCCCTCACCGAGCGCGAGGAGGCTGTG
CTGCGCCTGATGGCCCGCGGGCTGTCCAATGCCGAGATCGCGGCCCGGCTCGTGGTGGGCGTCGAGACGGTGAAGTCCCA
TGTCAGCGCCGTGCTGGCGAAGTTGGGTGCCCGGGACCGCACCCAGGCGGTCATCGCCGCCTACGAGTCCGGATTCGTCG
CTCCGAGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.784

98.611

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.375