Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG764_RS31195 Genome accession   NZ_CP108095
Coordinates   7016374..7017024 (-) Length   216 a.a.
NCBI ID   WP_328971661.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7011374..7022024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS31175 (OG764_31180) - 7011670..7012521 (-) 852 WP_328971657.1 alpha/beta fold hydrolase -
  OG764_RS31180 (OG764_31185) - 7012800..7013666 (+) 867 WP_328971658.1 RNA polymerase sigma-70 factor -
  OG764_RS31185 (OG764_31190) - 7013928..7014689 (+) 762 WP_328971659.1 GntR family transcriptional regulator -
  OG764_RS31190 (OG764_31195) - 7015135..7016289 (-) 1155 WP_328971660.1 ROK family transcriptional regulator -
  OG764_RS31195 (OG764_31200) vraR 7016374..7017024 (-) 651 WP_328971661.1 response regulator transcription factor Regulator
  OG764_RS31200 (OG764_31205) - 7017029..7018210 (-) 1182 WP_328971662.1 histidine kinase -
  OG764_RS31205 (OG764_31210) - 7018319..7019251 (+) 933 WP_328971663.1 ABC transporter ATP-binding protein -
  OG764_RS31210 (OG764_31215) - 7019255..7020007 (+) 753 WP_328971664.1 ABC transporter permease -
  OG764_RS31215 (OG764_31220) - 7020048..7020482 (+) 435 WP_328971665.1 hypothetical protein -
  OG764_RS31220 (OG764_31225) mug 7020460..7021008 (-) 549 WP_328973232.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23176.81 Da        Isoelectric Point: 4.8482

>NTDB_id=653558 OG764_RS31195 WP_328971661.1 7016374..7017024(-) (vraR) [Streptomyces sp. NBC_00239]
MPITVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVVPLVRQLRPDVVAMDVRMPLLDGIEATKAVLRTVDAPPKI
LVVTTFENDEYVYQALRAGADGFLLKRARPAEIVHAVRLVAEGETLLFPTALRALAAEYGNRAARQALERAALTEREEAV
LRLMARGLSNAEIASEMYVGTETVKSHVSAVLTKLGARDRTQAVIAAYESGFVAPA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=653558 OG764_RS31195 WP_328971661.1 7016374..7017024(-) (vraR) [Streptomyces sp. NBC_00239]
ATGCCGATCACCGTGCTTCTCGTCGACGACGAGCCCCTCGTGCGCGCGGGCCTGCGCGCGGTCCTGGAGGCCCAGCCCGA
TATCGAGGTCGTGGGCGAGGCCGCCGACGGGGCGGCCGTCGTGCCGCTGGTGCGGCAACTGCGGCCGGACGTGGTCGCGA
TGGACGTCCGGATGCCGCTGCTGGACGGCATCGAGGCCACCAAGGCGGTGCTGCGGACGGTCGACGCTCCGCCGAAGATC
CTGGTCGTCACCACGTTCGAGAACGACGAGTACGTGTACCAGGCGTTGCGGGCGGGGGCTGACGGGTTCCTGCTGAAGCG
GGCCCGGCCGGCGGAGATCGTGCACGCGGTGCGGCTGGTGGCGGAGGGCGAGACGCTGCTGTTCCCCACGGCGTTGCGGG
CGCTCGCGGCGGAGTACGGAAACCGGGCGGCCCGGCAGGCACTGGAGCGGGCGGCACTGACGGAGCGGGAGGAGGCGGTG
CTGAGGCTGATGGCGCGCGGTCTGTCGAACGCGGAGATCGCCTCGGAGATGTACGTGGGCACAGAGACGGTGAAGAGCCA
TGTCAGCGCGGTGCTGACGAAACTGGGGGCGCGGGACCGCACCCAGGCCGTCATCGCGGCGTACGAGTCGGGGTTCGTGG
CGCCCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.523

99.074

0.421
  degU Bacillus subtilis subsp. subtilis str. 168

34.956

100

0.366