Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG764_RS28590 Genome accession   NZ_CP108095
Coordinates   6496966..6497586 (-) Length   206 a.a.
NCBI ID   WP_328971298.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6491966..6502586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS28570 (OG764_28580) - 6492182..6493411 (-) 1230 WP_328971294.1 DUF349 domain-containing protein -
  OG764_RS28575 (OG764_28585) - 6493584..6494375 (-) 792 WP_328971295.1 peptidylprolyl isomerase -
  OG764_RS28580 (OG764_28590) - 6494555..6495265 (+) 711 WP_328971296.1 MBL fold metallo-hydrolase -
  OG764_RS28585 (OG764_28595) hisS 6495276..6496538 (+) 1263 WP_328971297.1 histidine--tRNA ligase -
  OG764_RS28590 (OG764_28600) vraR 6496966..6497586 (-) 621 WP_328971298.1 response regulator transcription factor Regulator
  OG764_RS28595 (OG764_28605) - 6497601..6498836 (-) 1236 WP_328971299.1 sensor histidine kinase -
  OG764_RS28600 (OG764_28610) - 6498794..6499657 (-) 864 WP_328971300.1 ABC transporter permease -
  OG764_RS28605 (OG764_28615) - 6499654..6500544 (-) 891 WP_328971301.1 ABC transporter ATP-binding protein -
  OG764_RS28610 (OG764_28620) - 6500700..6501305 (+) 606 WP_328971302.1 vitamin K epoxide reductase family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22124.62 Da        Isoelectric Point: 6.4990

>NTDB_id=653555 OG764_RS28590 WP_328971298.1 6496966..6497586(-) (vraR) [Streptomyces sp. NBC_00239]
MIRILLADDHPVVREGLRGMLSAEPDLEVVAEAANGPQAEALAAQHLPDLVLMDLRMPGGDGVESIGRITAAGLPCRVVV
LTTYEEDRDILRAVEAGAAGYLLKDMARGELAEAIRAAVRGETVLAPSVAGRLVDRLRTRPERPRLSDREVAVLRLVAEG
ATNAEIGRRLFVAESTVKTHLLRVFGKLSVTDRTAAVTTAMRHGLL

Nucleotide


Download         Length: 621 bp        

>NTDB_id=653555 OG764_RS28590 WP_328971298.1 6496966..6497586(-) (vraR) [Streptomyces sp. NBC_00239]
ATGATCCGCATCCTGCTGGCCGATGACCATCCGGTGGTACGGGAGGGCCTGCGCGGCATGCTCAGCGCCGAACCGGACCT
GGAGGTGGTCGCGGAGGCGGCGAACGGTCCGCAGGCGGAGGCGCTGGCCGCGCAGCACCTGCCGGACCTGGTCCTGATGG
ACCTGCGGATGCCGGGCGGCGACGGGGTGGAGTCGATCGGCCGGATCACGGCGGCCGGGCTGCCGTGCCGGGTGGTGGTG
CTGACCACGTACGAGGAGGACCGGGACATCCTGCGGGCCGTGGAGGCGGGGGCCGCGGGCTACCTGCTCAAGGACATGGC
CCGCGGGGAGCTGGCGGAGGCGATCCGGGCGGCCGTGCGCGGCGAGACGGTGCTCGCGCCGTCGGTGGCGGGCCGGCTGG
TGGACCGGCTCAGGACCCGGCCGGAGCGGCCGCGGCTGTCGGACCGCGAGGTGGCGGTGCTGCGGCTGGTCGCGGAGGGG
GCGACGAACGCGGAGATCGGGCGGCGGCTGTTCGTGGCCGAGTCCACGGTGAAGACGCATCTGCTGCGCGTCTTCGGCAA
GCTGTCGGTGACCGACCGGACGGCGGCGGTGACGACCGCCATGCGCCACGGCCTCCTGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-199)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.291

100

0.403
  degU Bacillus subtilis subsp. subtilis str. 168

34.978

100

0.379