Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG764_RS27135 Genome accession   NZ_CP108095
Coordinates   6171855..6172511 (+) Length   218 a.a.
NCBI ID   WP_328971048.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6166855..6177511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS27125 (OG764_27125) - 6169415..6170149 (-) 735 WP_328971046.1 transglycosylase SLT domain-containing protein -
  OG764_RS27130 (OG764_27130) - 6170690..6171862 (+) 1173 WP_328971047.1 GAF domain-containing sensor histidine kinase -
  OG764_RS27135 (OG764_27135) vraR 6171855..6172511 (+) 657 WP_328971048.1 response regulator transcription factor Regulator
  OG764_RS27140 (OG764_27140) - 6172639..6172884 (+) 246 WP_328973190.1 chaplin -
  OG764_RS27145 (OG764_27145) - 6172954..6173739 (-) 786 WP_328971049.1 hypothetical protein -
  OG764_RS27150 (OG764_27150) - 6173875..6174669 (+) 795 WP_328971050.1 ABC transporter ATP-binding protein -
  OG764_RS27155 (OG764_27155) - 6174736..6175164 (+) 429 WP_328971051.1 NfeD family protein -
  OG764_RS27160 (OG764_27160) - 6175278..6176225 (+) 948 WP_328971052.1 SPFH domain-containing protein -
  OG764_RS27165 (OG764_27165) - 6176304..6177080 (+) 777 WP_328971053.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23426.84 Da        Isoelectric Point: 5.3797

>NTDB_id=653552 OG764_RS27135 WP_328971048.1 6171855..6172511(+) (vraR) [Streptomyces sp. NBC_00239]
MADAPRPKIRVLVVDDHQVVRRGLRTFLEVQDDIEVVGEAADGDAGIAAAEDLRPDVVLMDIKMPGTDGIEALRRLRELA
NPARVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPEALAGAIRSVHAGHVLLQPEVAVTLLSPEEQGAPAGRGGSLTERE
REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALYAVRHGLVDG

Nucleotide


Download         Length: 657 bp        

>NTDB_id=653552 OG764_RS27135 WP_328971048.1 6171855..6172511(+) (vraR) [Streptomyces sp. NBC_00239]
GTGGCTGACGCACCTCGCCCGAAGATCCGCGTCCTCGTCGTCGACGACCACCAGGTGGTCCGGCGCGGGCTGCGCACCTT
CCTGGAGGTCCAGGACGACATAGAGGTGGTCGGCGAGGCCGCCGACGGCGACGCGGGCATCGCCGCCGCCGAGGACCTGC
GCCCCGACGTGGTCCTCATGGACATCAAGATGCCCGGCACCGACGGCATCGAGGCACTGCGCCGGCTGCGCGAGCTCGCC
AATCCGGCCCGCGTCCTCATCGTCACCAGCTTCACCGAGCAGCGCACCGTCGTCCCCGCCCTGCGCGCCGGCGCCGCCGG
CTACGTATACAAGGACATCGACCCCGAAGCCCTGGCCGGCGCGATCCGCTCGGTCCACGCCGGGCACGTCCTGCTCCAGC
CGGAGGTCGCGGTGACCCTGCTCTCCCCGGAGGAGCAGGGCGCACCGGCCGGCCGCGGCGGCTCCCTGACCGAGCGGGAG
CGCGAGGTCCTCGGTCTGATCGCGGACGGCCGTTCCAACCGGGAGATCGCCCGCGCCCTCGTCCTGTCCGAGAAGACGGT
GAAGACGCACGTGTCGAACATCCTGATGAAGCTGGACCTCGCCGACCGCACCCAGGCCGCCCTGTACGCCGTACGGCACG
GCCTCGTCGACGGGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(11-122)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.154

95.413

0.44
  degU Bacillus subtilis subsp. subtilis str. 168

39.111

100

0.404