Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG764_RS26800 Genome accession   NZ_CP108095
Coordinates   6100971..6101657 (+) Length   228 a.a.
NCBI ID   WP_328973184.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6095971..6106657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS26785 (OG764_26785) - 6097419..6098189 (+) 771 WP_328970985.1 IclR family transcriptional regulator -
  OG764_RS26790 (OG764_26790) - 6098645..6099517 (+) 873 WP_328970986.1 hypothetical protein -
  OG764_RS26795 (OG764_26795) - 6099676..6100914 (+) 1239 WP_328970987.1 histidine kinase -
  OG764_RS26800 (OG764_26800) vraR 6100971..6101657 (+) 687 WP_328973184.1 response regulator transcription factor Regulator
  OG764_RS26805 (OG764_26805) - 6101720..6103174 (+) 1455 WP_328970988.1 penicillin-binding protein 2 -
  OG764_RS26810 (OG764_26810) - 6103233..6103775 (+) 543 WP_328970989.1 GNAT family N-acetyltransferase -
  OG764_RS26815 (OG764_26815) - 6103935..6104645 (+) 711 WP_328970990.1 DsbA family oxidoreductase -
  OG764_RS26820 (OG764_26820) - 6104753..6105826 (+) 1074 WP_328970991.1 aminotransferase class V-fold PLP-dependent enzyme -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 23807.43 Da        Isoelectric Point: 6.2696

>NTDB_id=653551 OG764_RS26800 WP_328973184.1 6100971..6101657(+) (vraR) [Streptomyces sp. NBC_00239]
MSGGSAGGPGGGVLRVVVADDERMVRTALRVILDAEPDLDVVGEAATGAEAVSVVRELRPDVVLMDVRMPGIDGIRATEQ
ILATLAEPPRVVVVTTFENDAYVYEALRAGAAGFLLKRAAAEELIGAVRLVARSDSVLFPAAVRALAAEHARREPAAPAW
AARLTGREADVLRLMAGGLSNHEISERLGVGPATVKTHVAAVLAKTGSRDRTQAVIAAFEGGLMMRKS

Nucleotide


Download         Length: 687 bp        

>NTDB_id=653551 OG764_RS26800 WP_328973184.1 6100971..6101657(+) (vraR) [Streptomyces sp. NBC_00239]
ATGTCCGGCGGGTCGGCCGGGGGGCCTGGTGGGGGCGTGTTGCGGGTGGTGGTGGCCGACGACGAGCGGATGGTGCGCAC
GGCGTTGCGGGTGATCCTCGATGCCGAGCCGGACCTCGACGTGGTGGGGGAGGCCGCCACCGGGGCCGAGGCGGTGTCCG
TCGTCCGTGAGCTGCGGCCCGACGTGGTCCTCATGGACGTGCGGATGCCCGGTATCGACGGGATCCGGGCCACCGAGCAG
ATCCTCGCCACCCTGGCCGAGCCGCCGCGGGTCGTGGTCGTGACCACCTTCGAGAACGACGCCTACGTGTACGAGGCGCT
GCGGGCCGGGGCCGCCGGGTTCCTGCTCAAGCGGGCGGCGGCCGAGGAGCTGATCGGGGCGGTCCGGCTGGTCGCCCGCA
GTGACTCGGTGCTCTTCCCCGCCGCCGTCCGGGCCCTCGCGGCGGAGCACGCCCGGCGGGAGCCGGCGGCCCCGGCGTGG
GCGGCGCGGCTCACCGGGCGGGAGGCGGACGTCCTGCGCCTGATGGCCGGCGGGCTGTCGAACCACGAGATCAGCGAGCG
GCTCGGAGTGGGCCCGGCCACCGTCAAGACGCACGTGGCCGCCGTCCTGGCCAAGACGGGCTCGCGGGACCGCACCCAGG
CGGTCATCGCCGCCTTCGAAGGAGGTCTGATGATGAGGAAAAGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(16-128)

Bacterial regulatory proteins, luxR family (GerE)

(164-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.81

92.544

0.368
  degU Bacillus subtilis subsp. subtilis str. 168

37.387

97.368

0.364