Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG764_RS20095 Genome accession   NZ_CP108095
Coordinates   4534814..4535449 (-) Length   211 a.a.
NCBI ID   WP_328969795.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00239     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4529814..4540449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG764_RS20080 (OG764_20080) - 4531012..4531686 (+) 675 WP_328969793.1 pentapeptide repeat-containing protein -
  OG764_RS20085 (OG764_20085) - 4531740..4532240 (-) 501 WP_328973081.1 hypothetical protein -
  OG764_RS20090 (OG764_20090) - 4532363..4533964 (-) 1602 WP_328969794.1 M4 family metallopeptidase -
  OG764_RS20095 (OG764_20095) vraR 4534814..4535449 (-) 636 WP_328969795.1 response regulator transcription factor Regulator
  OG764_RS20100 (OG764_20100) - 4535446..4536672 (-) 1227 WP_328969796.1 sensor histidine kinase -
  OG764_RS20105 (OG764_20105) - 4537209..4537763 (+) 555 WP_328969797.1 heme-binding protein -
  OG764_RS20110 (OG764_20110) - 4537892..4539247 (+) 1356 WP_328973082.1 M1 family metallopeptidase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22144.38 Da        Isoelectric Point: 5.6028

>NTDB_id=653535 OG764_RS20095 WP_328969795.1 4534814..4535449(-) (vraR) [Streptomyces sp. NBC_00239]
MTTTTTTILLCDDHVVVRAGLLALLGSEPDIEVVGEAGSGEEAVALAAKLRPDVVLMDLQLGEGIDGVEATRRITAGPGA
PHVLVLTTYDTDADITRAIGAGATGYLLKAERPEELFTAIHAAAQGRTALSPPVASRVMAHMRGSSRPTLTDRELDILGQ
LAHGLGNREIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLLP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=653535 OG764_RS20095 WP_328969795.1 4534814..4535449(-) (vraR) [Streptomyces sp. NBC_00239]
ATGACCACGACGACCACGACGATCCTGCTGTGCGACGACCACGTGGTGGTACGGGCCGGGCTGCTGGCCCTCCTCGGCAG
CGAACCCGACATCGAGGTGGTCGGCGAGGCCGGCAGCGGCGAGGAGGCGGTCGCGCTCGCCGCGAAGCTGCGCCCCGACG
TGGTCCTCATGGACCTCCAGCTCGGGGAGGGCATCGACGGGGTCGAAGCGACGCGGCGGATCACCGCCGGGCCGGGCGCA
CCGCACGTGCTCGTGCTGACGACGTACGACACGGACGCCGACATCACGCGGGCGATCGGGGCGGGCGCCACGGGGTACCT
GCTGAAGGCGGAACGGCCCGAGGAGCTGTTCACCGCGATCCACGCGGCGGCTCAGGGGCGCACGGCCCTCTCGCCGCCGG
TCGCGAGCCGGGTGATGGCCCACATGCGCGGCTCGTCCCGGCCCACCCTGACGGACCGTGAACTCGACATCCTCGGGCAG
CTGGCGCACGGGCTCGGGAACCGGGAGATCGCGCGGGCGCTCTTCATCAGCGAGGCGACGGTCAAGACGCATCTGGGGCG
TATCTACGACAAGCTCGGCGTCGACACGCGGGCCGGCGCGGTAGCCGTGGCCAAGGAACAACGCCTCCTGCCGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(8-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.385

98.578

0.398
  degU Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.379