Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT59_RS38265 Genome accession   NZ_CP108094
Coordinates   8599314..8599937 (-) Length   207 a.a.
NCBI ID   WP_326724353.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00243     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8594314..8604937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT59_RS38245 (OHT59_38265) - 8594792..8596021 (-) 1230 WP_326724349.1 DUF349 domain-containing protein -
  OHT59_RS38250 (OHT59_38270) - 8596157..8596996 (-) 840 WP_326724350.1 peptidylprolyl isomerase -
  OHT59_RS38255 (OHT59_38275) - 8597184..8597891 (+) 708 WP_326724351.1 MBL fold metallo-hydrolase -
  OHT59_RS38260 (OHT59_38280) hisS 8597905..8599167 (+) 1263 WP_326724352.1 histidine--tRNA ligase -
  OHT59_RS38265 (OHT59_38285) vraR 8599314..8599937 (-) 624 WP_326724353.1 response regulator transcription factor Regulator
  OHT59_RS38270 (OHT59_38290) - 8599934..8601133 (-) 1200 WP_326724354.1 sensor histidine kinase -
  OHT59_RS38275 (OHT59_38295) - 8601130..8601975 (-) 846 WP_326724355.1 ABC transporter permease -
  OHT59_RS38280 (OHT59_38300) - 8601972..8602838 (-) 867 WP_326724356.1 ABC transporter ATP-binding protein -
  OHT59_RS38285 (OHT59_38305) - 8602978..8603619 (+) 642 WP_266467558.1 vitamin K epoxide reductase family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22160.66 Da        Isoelectric Point: 5.4174

>NTDB_id=653477 OHT59_RS38265 WP_326724353.1 8599314..8599937(-) (vraR) [Streptomyces sp. NBC_00243]
MIRIVLADDHPVVREGLRAMLSAEPDLEVIADASSGPQAEALAAELRPDIVLMDLRMPGGGGVDSIVRMTAAGLPCRVVV
LTTYETDRDILRAVEAGAAGYLLKDLPRGELADAVRAAARGETVLAPSVAARLVDQLRTKPERPRLSERETAVLRLVAEG
CTNAEIGRRLFIGESTVKTHLLRVFGKLGVDDRTAAVTSAMRFGLLE

Nucleotide


Download         Length: 624 bp        

>NTDB_id=653477 OHT59_RS38265 WP_326724353.1 8599314..8599937(-) (vraR) [Streptomyces sp. NBC_00243]
GTGATCCGGATCGTCCTCGCCGACGACCATCCCGTCGTACGCGAAGGGCTGCGCGCGATGCTCAGCGCCGAGCCCGACCT
CGAGGTGATCGCCGACGCGTCCAGCGGACCTCAGGCGGAGGCGCTGGCCGCCGAACTCCGGCCCGACATCGTGCTCATGG
ACCTGCGTATGCCGGGTGGCGGGGGTGTCGACTCGATCGTCCGGATGACCGCGGCCGGGTTGCCGTGCCGGGTCGTCGTG
CTGACGACGTACGAGACGGACCGGGACATCCTGCGGGCCGTGGAGGCCGGGGCGGCGGGGTATCTGCTCAAGGACCTGCC
GCGCGGTGAACTCGCGGACGCGGTTCGGGCGGCGGCTCGTGGGGAGACGGTGCTCGCGCCGTCCGTGGCCGCGCGGCTCG
TCGACCAGCTCCGTACGAAGCCGGAGCGGCCTCGGCTGTCCGAGCGTGAGACGGCTGTCCTTCGGCTGGTCGCCGAAGGG
TGCACCAACGCGGAGATCGGGCGGCGGCTGTTCATCGGGGAGTCCACCGTGAAGACCCATCTGCTGCGGGTCTTCGGGAA
GTTGGGGGTGGATGACCGGACGGCGGCGGTGACGAGTGCGATGCGGTTCGGGTTGCTGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-200)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.681

100

0.377
  degU Bacillus subtilis subsp. subtilis str. 168

34.821

100

0.377