Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHT59_RS21520 Genome accession   NZ_CP108094
Coordinates   4874035..4874634 (-) Length   199 a.a.
NCBI ID   WP_326721624.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00243     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4869035..4879634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT59_RS21490 (OHT59_21495) - 4869787..4869972 (-) 186 WP_326721619.1 DUF397 domain-containing protein -
  OHT59_RS21495 (OHT59_21500) - 4869969..4870781 (-) 813 WP_326721620.1 helix-turn-helix transcriptional regulator -
  OHT59_RS21500 (OHT59_21505) - 4870860..4871267 (+) 408 WP_326721621.1 hypothetical protein -
  OHT59_RS21505 (OHT59_21510) - 4871291..4871704 (-) 414 WP_326721622.1 SsgA family sporulation/cell division regulator -
  OHT59_RS21510 (OHT59_21515) - 4871835..4872506 (+) 672 WP_326721623.1 sigma-70 family RNA polymerase sigma factor -
  OHT59_RS21515 (OHT59_21520) - 4873383..4874042 (-) 660 WP_266457438.1 DUF5063 domain-containing protein -
  OHT59_RS21520 (OHT59_21525) recR 4874035..4874634 (-) 600 WP_326721624.1 recombination mediator RecR Machinery gene
  OHT59_RS21525 (OHT59_21530) - 4874753..4875097 (-) 345 WP_266457444.1 YbaB/EbfC family nucleoid-associated protein -
  OHT59_RS21530 (OHT59_21535) - 4875358..4876167 (+) 810 WP_326721625.1 SLATT domain-containing protein -
  OHT59_RS21535 (OHT59_21540) - 4876286..4877689 (-) 1404 WP_326721626.1 M20/M25/M40 family metallo-hydrolase -
  OHT59_RS21540 (OHT59_21545) - 4877923..4878476 (-) 554 Protein_4279 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21772.18 Da        Isoelectric Point: 4.9908

>NTDB_id=653443 OHT59_RS21520 WP_326721624.1 4874035..4874634(-) (recR) [Streptomyces sp. NBC_00243]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEAKAKVRFCATCGNVAQEELCNICRDPRRDLSV
ICVVEESKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGVVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=653443 OHT59_RS21520 WP_326721624.1 4874035..4874634(-) (recR) [Streptomyces sp. NBC_00243]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGGCGGTTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCGACGGACGTCCGCCGTCTCGCGCAGTGCCTGATGGAGGCCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGGAATGTCGCGCAGGAAGAGCTCTGCAACATCTGCCGCGACCCGCGCCGCGACCTCTCGGTC
ATCTGCGTGGTCGAGGAGTCGAAGGACGTCGTGGCGGTCGAGCGCACCCGCGAGTTCCGGGGCAAGTACCACGTCCTGGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGCATAAGAGAGCTCCTGGCCCGTCTCGCCGACGGTG
TGGTCACGGAACTGATCCTCGCCACGGACCCGAACCTGGAGGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTCACGCT
CGGTCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467