Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHT59_RS20670 Genome accession   NZ_CP108094
Coordinates   4686855..4688264 (+) Length   469 a.a.
NCBI ID   WP_326721492.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00243     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4681855..4693264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT59_RS20650 (OHT59_20655) - 4681876..4682700 (-) 825 WP_266456932.1 sugar phosphate isomerase/epimerase -
  OHT59_RS20655 (OHT59_20660) - 4682906..4683838 (-) 933 WP_266456935.1 Ppx/GppA phosphatase family protein -
  OHT59_RS20660 (OHT59_20665) - 4684036..4684749 (+) 714 WP_266463896.1 hypothetical protein -
  OHT59_RS20665 (OHT59_20670) - 4684782..4686647 (-) 1866 WP_326721491.1 hypothetical protein -
  OHT59_RS20670 (OHT59_20675) radA/sms 4686855..4688264 (+) 1410 WP_326721492.1 DNA repair protein RadA Machinery gene
  OHT59_RS20675 (OHT59_20680) disA 4688336..4689460 (+) 1125 WP_266830670.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHT59_RS20680 (OHT59_20685) - 4689562..4690383 (-) 822 WP_326721493.1 hypothetical protein -
  OHT59_RS20685 (OHT59_20690) - 4690717..4691631 (+) 915 WP_326721494.1 A/G-specific adenine glycosylase -
  OHT59_RS20690 (OHT59_20695) - 4691876..4692427 (+) 552 WP_266456951.1 SigE family RNA polymerase sigma factor -
  OHT59_RS20695 (OHT59_20700) - 4692565..4693164 (+) 600 WP_326721495.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49603.80 Da        Isoelectric Point: 8.2557

>NTDB_id=653437 OHT59_RS20670 WP_326721492.1 4686855..4688264(+) (radA/sms) [Streptomyces sp. NBC_00243]
MAVRTKSAKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIVDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKIPPGMKVLEVADMGAALSVLPRSRRREAPREQEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=653437 OHT59_RS20670 WP_326721492.1 4686855..4688264(+) (radA/sms) [Streptomyces sp. NBC_00243]
ATGGCTGTCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGTTGCTCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCACCCGCTGTCCGTACGACGGCACCGGGCC
GGGTCACCACGTCCGCGGTGCCCATCGGGCAGGTCGACGGCCGCCAGGCCACCGCCCGCTCCACCGGAGTGCCCGAGCTG
GACCGCGTCCTTGGCGGCGGTCTGGTACCCGGCGCGGTCGTCCTCCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACCCT
GCTCCTTGACGTGGCGGCGAAGGCGGCGAGCGACGAGCACCGCACCTTGTACGTGACCGGGGAGGAGTCGGCCAGCCAGG
TGCGGCTCCGCGCCGACCGCATCAAGGCCATCGACGACCACCTCTATCTCGCCGCCGAGACCGATCTGGCCGCCGTTCTC
GGTCACTTGGACGCGGTGAAGCCGTCCCTGCTCATCGTGGACTCCGTACAGACCGTCGCCTCCCCGGAGATCGACGGTGC
GCCGGGCGGCATGGCCCAGGTCCGGGAAGTCGCCGGTGCCCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTCC
TCGTCGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTCCTCGAACACCTCGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTCAGGCTCGTACGAGGGGTCAAGAACCGTTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGACTGGCCGACCCCTCGGGCCTGTTCCTCACCCGCCGCGCCGAGGCGGTCCCCG
GCACCTGTCTGACGGTCACTCTGGAGGGCCGCCGCCCCCTGGTCGCCGAAGTGCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCACCCCGTCGCACGACCTCCGGTCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCACAGCCCTGGGGAAGCGGGACATCTACTCGGCGACGGTCGGCGGAGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CGATCGCCCTCGCCCTCGCCTCCGCCGCGAGCGACACCCCGCTGCCGAAGAACCTCGTGGCGATCGGCGAAGTGGGGCTC
GCCGGGGAGGTCAGACGGGTCACGGGCGTTCAGCGCCGGCTCGCCGAAGCCCACCGGCTCGGCTTCACCCACGCCCTCGT
CCCGAGCGATCCCGGCAAGATCCCTCCCGGTATGAAGGTCCTGGAAGTCGCCGACATGGGAGCCGCGCTGAGCGTCCTGC
CGAGGTCGCGTCGTCGAGAGGCCCCACGGGAGCAGGAAGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.363

96.375

0.418
  radA Streptococcus mitis NCTC 12261

44.009

92.537

0.407
  radA Streptococcus mitis SK321

44.009

92.537

0.407
  radA Streptococcus pneumoniae TIGR4

44.131

90.832

0.401
  radA Streptococcus pneumoniae D39

44.131

90.832

0.401
  radA Streptococcus pneumoniae Rx1

44.131

90.832

0.401
  radA Streptococcus pneumoniae R6

44.131

90.832

0.401