Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT59_RS06400 Genome accession   NZ_CP108094
Coordinates   1420546..1421181 (+) Length   211 a.a.
NCBI ID   WP_266472653.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00243     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1415546..1426181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT59_RS06380 (OHT59_06385) - 1415871..1416941 (+) 1071 WP_326719176.1 LacI family DNA-binding transcriptional regulator -
  OHT59_RS06385 (OHT59_06390) - 1417162..1418799 (-) 1638 WP_326719177.1 molybdopterin-dependent oxidoreductase -
  OHT59_RS06390 (OHT59_06395) - 1418859..1419062 (-) 204 WP_266472649.1 hypothetical protein -
  OHT59_RS06395 (OHT59_06400) - 1419280..1420527 (+) 1248 WP_326719178.1 sensor histidine kinase -
  OHT59_RS06400 (OHT59_06405) vraR 1420546..1421181 (+) 636 WP_266472653.1 response regulator transcription factor Regulator
  OHT59_RS06410 (OHT59_06415) - 1421728..1422495 (-) 768 WP_326719179.1 NPP1 family protein -
  OHT59_RS06415 (OHT59_06420) - 1422801..1423715 (-) 915 WP_326719180.1 YceI family protein -
  OHT59_RS06420 (OHT59_06425) - 1423892..1424977 (-) 1086 WP_326719181.1 maleylacetate reductase -
  OHT59_RS06425 (OHT59_06430) - 1424974..1425837 (-) 864 WP_326719182.1 intradiol ring-cleavage dioxygenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22422.91 Da        Isoelectric Point: 6.2288

>NTDB_id=653393 OHT59_RS06400 WP_266472653.1 1420546..1421181(+) (vraR) [Streptomyces sp. NBC_00243]
MTIHILIVDDHPVVRFGLRGMLEAYDDLRVVGEAGSGDEAIVLAAATRPDVILMDLRMPGTDGATATARIRQEHPGIRVL
VLTTYEGDADILPAIEAGATGYLLKDTPIGTLTDAIRAAARGETVLAPLVAARLVTHMQAPAGEQLTPREVQVLGLVARG
LSNSEIGRQLYIGEATVKTHLLRTFVKLGVNDRTAAVTIALSRGILTTPHQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=653393 OHT59_RS06400 WP_266472653.1 1420546..1421181(+) (vraR) [Streptomyces sp. NBC_00243]
ATGACTATCCACATCCTGATCGTCGATGACCATCCCGTCGTACGCTTCGGCCTCCGCGGCATGCTTGAGGCCTACGACGA
CCTGCGCGTCGTTGGAGAGGCAGGCTCCGGCGACGAGGCGATCGTCCTCGCCGCCGCGACGCGCCCGGACGTCATCCTGA
TGGATCTGCGGATGCCGGGCACCGATGGCGCCACCGCGACGGCGCGCATCCGCCAGGAGCACCCCGGCATTCGCGTGCTC
GTGCTGACCACCTACGAAGGTGACGCCGACATCCTGCCGGCGATCGAGGCCGGTGCCACCGGTTACCTGCTCAAGGACAC
GCCGATCGGTACCCTCACCGACGCGATACGGGCGGCCGCCCGCGGCGAAACCGTCCTCGCCCCACTGGTAGCCGCCCGGC
TGGTGACCCACATGCAGGCACCGGCCGGAGAGCAGTTGACCCCCCGCGAGGTTCAGGTACTCGGCCTCGTCGCGCGAGGT
CTGTCCAACAGCGAGATCGGCCGACAGCTGTACATCGGCGAAGCGACGGTGAAGACGCACCTGCTGCGAACGTTCGTCAA
GCTGGGAGTCAACGACCGTACCGCGGCCGTCACCATCGCTCTCTCGCGCGGCATCCTCACCACACCACACCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-200)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.788

98.578

0.422
  degU Bacillus subtilis subsp. subtilis str. 168

34.842

100

0.365