Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT52_RS25180 Genome accession   NZ_CP108093
Coordinates   5783665..5784309 (+) Length   214 a.a.
NCBI ID   WP_328722466.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00247     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5778665..5789309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT52_RS25170 (OHT52_25150) - 5781275..5782051 (-) 777 WP_328722464.1 transglycosylase SLT domain-containing protein -
  OHT52_RS25175 (OHT52_25155) - 5782527..5783672 (+) 1146 WP_328722465.1 GAF domain-containing sensor histidine kinase -
  OHT52_RS25180 (OHT52_25160) vraR 5783665..5784309 (+) 645 WP_328722466.1 response regulator transcription factor Regulator
  OHT52_RS25185 (OHT52_25165) - 5784432..5785220 (-) 789 WP_328722467.1 hypothetical protein -
  OHT52_RS25190 (OHT52_25170) - 5785366..5786163 (+) 798 WP_328722468.1 ABC transporter ATP-binding protein -
  OHT52_RS25195 (OHT52_25175) - 5786282..5786704 (+) 423 WP_328722469.1 NfeD family protein -
  OHT52_RS25200 (OHT52_25180) - 5786837..5787787 (+) 951 WP_328722470.1 SPFH domain-containing protein -
  OHT52_RS25205 (OHT52_25185) - 5787943..5788710 (+) 768 WP_328722471.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22987.32 Da        Isoelectric Point: 5.3711

>NTDB_id=653377 OHT52_RS25180 WP_328722466.1 5783665..5784309(+) (vraR) [Streptomyces sp. NBC_00247]
MADKTIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVAQAEELRPDVVLMDIKMPGMDGIEALRKLRELANPA
RVLVVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDSGGGTGRGTTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGMAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=653377 OHT52_RS25180 WP_328722466.1 5783665..5784309(+) (vraR) [Streptomyces sp. NBC_00247]
GTGGCTGACAAGACCATCCGCGTGCTGCTGGTCGACGACCACCAGGTGGTACGGCGCGGACTGCGCACGTTCCTGGAGGT
GCAGGACGACATAGAGGTCGTCGGAGAGGCCGCCGACGGCGCCGAGGGCGTCGCCCAGGCCGAGGAGCTCCGCCCCGACG
TGGTGCTGATGGACATCAAGATGCCCGGCATGGACGGCATAGAGGCGCTGCGCAAGCTCCGCGAGCTGGCCAACCCGGCG
CGGGTCCTCGTCGTCACCAGCTTCACCGAGCAGCGGACCGTCGTCCCCGCGCTGCGCGCCGGAGCCTCCGGCTACGTCTA
CAAGGACGTCGACCCCGACGCCCTGGCAGGCGCCATCCGCTCCGTCCACGCGGGCCACGTCCTGCTCCAGCCCGAGGTGG
CGGGGGCGCTCCTCGCCCAGGAGGACAGCGGCGGCGGTACGGGCCGGGGCACCACCCTCACCGAGCGTGAGCGCGAAGTG
CTCGGCCTCATCGCGGACGGCCGGTCCAACCGCGAGATCGCCCGCGCGCTGGTGCTCTCCGAGAAGACCGTCAAGACCCA
CGTCTCGAACATCCTGATGAAGCTGGACCTGGCCGACCGCACCCAGGCCGCCCTCTGGGCCGTACGCCACGGAATGGCGG
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.673

97.196

0.444
  degU Bacillus subtilis subsp. subtilis str. 168

38.462

100

0.397