Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHT52_RS13190 Genome accession   NZ_CP108093
Coordinates   3131159..3131758 (-) Length   199 a.a.
NCBI ID   WP_328720341.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3126159..3136758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT52_RS13170 (OHT52_13150) - 3127690..3128694 (-) 1005 WP_328720337.1 hypothetical protein -
  OHT52_RS13175 (OHT52_13155) - 3128766..3129401 (-) 636 WP_328720338.1 TetR family transcriptional regulator -
  OHT52_RS13180 (OHT52_13160) - 3129510..3130274 (+) 765 WP_328720339.1 SDR family NAD(P)-dependent oxidoreductase -
  OHT52_RS13185 (OHT52_13165) - 3130433..3131092 (-) 660 WP_328720340.1 DUF5063 domain-containing protein -
  OHT52_RS13190 (OHT52_13170) recR 3131159..3131758 (-) 600 WP_328720341.1 recombination mediator RecR Machinery gene
  OHT52_RS13195 (OHT52_13175) - 3131913..3132248 (-) 336 WP_328720342.1 YbaB/EbfC family nucleoid-associated protein -
  OHT52_RS13200 (OHT52_13180) - 3132617..3133417 (+) 801 WP_328720343.1 SLATT domain-containing protein -
  OHT52_RS13205 (OHT52_13185) - 3133577..3134227 (-) 651 WP_328720344.1 hypothetical protein -
  OHT52_RS13210 (OHT52_13190) - 3134460..3135149 (-) 690 WP_328720345.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21931.25 Da        Isoelectric Point: 5.1558

>NTDB_id=653354 OHT52_RS13190 WP_328720341.1 3131159..3131758(-) (recR) [Streptomyces sp. NBC_00247]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPTDVRRLAHALLEVKDKVRFCSICGNVAQQEQCNICRDTRRDLTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=653354 OHT52_RS13190 WP_328720341.1 3131159..3131758(-) (recR) [Streptomyces sp. NBC_00247]
TTGTACGAAGGCGTTGTTCAGGACCTCATCGACGAACTGGGCAGGCTCCCGGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTTCTGCAGGCGGAGCCGACCGATGTGAGGCGCCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GCTTCTGTTCGATCTGCGGCAATGTCGCGCAGCAGGAGCAGTGCAACATCTGTCGCGACACCCGCCGCGACCTGACGGTC
ATCTGTGTGGTCGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGGCGCTACCACGTGCTCGG
CGGCGCGATCAGCCCCATCGAGGGTGTAGGCCCCGACGATCTGCGCATCCGCGAGTTGCTGGCGCGGCTTGCCGACGGTT
CCATCACGGAGCTGATCCTGGCGACCGACCCGAACCTTGAGGGTGAGGCCACCGCGACGTACCTGGCGCGGATGATCAAG
CCGATGGGGCTCCGAGTCACCCGTCTCGCCAGTGGTCTGCCGGTGGGCGGCGACCTGGAGTACGCGGACGAAGTGACCCT
GGGCCGCGCCTTCGAGGGGAGACGGCTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462