Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHT52_RS12135 Genome accession   NZ_CP108093
Coordinates   2882371..2883783 (+) Length   470 a.a.
NCBI ID   WP_328720158.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2877371..2888783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT52_RS12120 (OHT52_12100) - 2877980..2878840 (+) 861 WP_328720155.1 hypothetical protein -
  OHT52_RS12125 (OHT52_12105) - 2879038..2881197 (-) 2160 WP_328720156.1 hypothetical protein -
  OHT52_RS12130 (OHT52_12110) - 2881454..2882287 (-) 834 WP_328720157.1 class I SAM-dependent methyltransferase -
  OHT52_RS12135 (OHT52_12115) radA/sms 2882371..2883783 (+) 1413 WP_328720158.1 DNA repair protein RadA Machinery gene
  OHT52_RS12140 (OHT52_12120) disA 2883864..2884988 (+) 1125 WP_328720159.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHT52_RS12145 (OHT52_12125) - 2885079..2885918 (-) 840 WP_328720160.1 hypothetical protein -
  OHT52_RS12150 (OHT52_12130) - 2886171..2887076 (+) 906 WP_328720161.1 A/G-specific adenine glycosylase -
  OHT52_RS12155 (OHT52_12135) - 2887174..2887881 (-) 708 WP_328720162.1 M23 family metallopeptidase -
  OHT52_RS12160 (OHT52_12140) - 2888358..2888717 (+) 360 WP_328720163.1 trypco2 family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49453.55 Da        Isoelectric Point: 8.0042

>NTDB_id=653350 OHT52_RS12135 WP_328720158.1 2882371..2883783(+) (radA/sms) [Streptomyces sp. NBC_00247]
MVARTKSTKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAAVPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEEHRTLYVTAEESASQVRMRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPAGMKVTEVADMGDALRVLPRRSRSEAPQEDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=653350 OHT52_RS12135 WP_328720158.1 2882371..2883783(+) (radA/sms) [Streptomyces sp. NBC_00247]
ATGGTTGCCCGCACGAAGTCCACGAAGGACCGTCCGTCCTACCGCTGCACGGAGTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCGGAATGCCAGGCCTGGGGCACCGTCGAGGAGTTCGGCGGCGCGCCCGCCGTGCGCACCACCGCGGCCG
GCCGGGTCTCCACCGCCGCCGTGCCCATCGGCCAGGTGGACAGCCGTCAGGCGACCGCCCGCTCGACCGGTGTCGGCGAG
CTGGACCGGGTGCTGGGCGGCGGGCTCGTACCGGGCGCCGTGGTGCTGCTGGCCGGGGAGCCGGGCGTCGGCAAGTCGAC
CCTGCTGCTGGACGTGGCCGCGAAGGCCGCGAGCGAGGAGCACCGCACCCTCTACGTCACGGCGGAGGAGTCCGCGAGCC
AGGTCCGGATGCGCGCCGACCGGATCAGGGCGATCAACGACCACCTCTACCTCGCGGCGGAGACCGACCTGTCGGCCGTC
CTCGGCCATCTCGACGCGGTCAAGCCGTCCCTGCTGGTGCTGGACTCGGTGCAGACCGTCGCGTCGCCGGAGATCGACGG
GGCGCCGGGCGGCATGGCGCAGGTCCGCGAGGTCGCCGGGGCGCTCATCCGCGCCTCCAAGGACCGCGGGATGGCGACGC
TGCTGGTGGGTCACGTCACCAAGGACGGCGCCATCGCGGGGCCCCGGTTGCTGGAGCACCTGGTCGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCGCGACTGCGACTCGTCCGGGGCGTCAAGAACCGTTACGGCGCGACCGACGAAGTCGGCTG
CTTCGAGCTGCACGACGAGGGGATCACCGGTCTCGCCGATCCGTCCGGCCTCTTCCTGACGCGGCGGGACGAGCCGGTGC
CCGGCACCTGTCTGACCGTCACTCTGGAGGGCAAGCGGCCCCTGGTGGCCGAGGTGCAGGCGCTCACGGTCGACTCGCAG
ATCCCGTCGCCCCGCCGCACCACCTCGGGCCTGGAGACCTCGCGGGTCTCGATGATGCTGGCGGTGCTGGAGCAGCGGGG
CCGGATCAGCGCGCTGGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGGGTGAAGCTCACCGAGCCCGCCGCGGACC
TGGCCATCGCGCTGGCGCTGGCGAGCGCGGCGAGCGACACCCCCCTCCCGAAGAACCTGGTCGCCATCGGTGAGGTGGGT
CTCGCCGGAGAGGTGCGGCGGGTCACCGGTGTGCAGCGCCGACTGGCCGAGGCGCACCGTCTCGGGTTCACTCACGCGCT
GGTCCCGGGCGATCCGGGAAAGGTCCCGGCCGGTATGAAGGTCACAGAAGTCGCCGACATGGGCGATGCTCTCAGGGTGC
TGCCGCGCCGGTCTCGTTCGGAGGCACCACAGGAGGACGGCGCGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-429)

AAA domain (AAA_25)

(85-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.17

0.419
  radA Streptococcus pneumoniae Rx1

42.257

96.17

0.406
  radA Streptococcus pneumoniae D39

42.257

96.17

0.406
  radA Streptococcus pneumoniae R6

42.257

96.17

0.406
  radA Streptococcus pneumoniae TIGR4

42.257

96.17

0.406
  radA Streptococcus mitis SK321

43.692

91.064

0.398
  radA Streptococcus mitis NCTC 12261

43.692

91.064

0.398