Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   LBCZ_RS07485 Genome accession   NZ_AP012544
Coordinates   1514176..1515417 (-) Length   413 a.a.
NCBI ID   WP_025012464.1    Uniprot ID   -
Organism   Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1509176..1520417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBCZ_RS07480 (LBCZ_1430) - 1512422..1514152 (-) 1731 WP_039639073.1 proline--tRNA ligase -
  LBCZ_RS07485 (LBCZ_1431) eeP 1514176..1515417 (-) 1242 WP_025012464.1 RIP metalloprotease RseP Regulator
  LBCZ_RS07490 (LBCZ_1432) - 1515434..1516222 (-) 789 WP_010488089.1 phosphatidate cytidylyltransferase -
  LBCZ_RS07495 (LBCZ_1433) - 1516258..1517010 (-) 753 WP_025012463.1 isoprenyl transferase -
  LBCZ_RS07500 (LBCZ_1434) frr 1517524..1518081 (-) 558 WP_025012462.1 ribosome recycling factor -
  LBCZ_RS07505 (LBCZ_1435) pyrH 1518081..1518800 (-) 720 WP_010488080.1 UMP kinase -
  LBCZ_RS07510 (LBCZ_1436) tsf 1519027..1519908 (-) 882 WP_039639079.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45387.03 Da        Isoelectric Point: 8.0451

>NTDB_id=65333 LBCZ_RS07485 WP_025012464.1 1514176..1515417(-) (eeP) [Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393]
MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLPLGGYVRMAGWQDDEDDIKPG
TMLSLILNDAGKVVRINASDKTTLEGGMPVQVSRVDLVKDLIIEGYPNGDEDSLQSWQVDHDATIIEEDGTEVQIAPEDV
QFQNAPVWRRLLVNFAGPMNNFILAILTFIIYGLIFGVQIFNTNQVGTVLPDYPAAQAGLKSNARVESIDGKKIHSFTDL
STQVSKHTGKSVMFTVKQDGKTQNIAIKPDKKGKIGVMVPVEKSPARAFTYGFTQTWDLAVRTWDVLKSMVTGGFSLNKL
AGPVGIYTMTSQSAKGGLAGLLFFMGYLSLGLGISNLLPIPVLDGGKILLNLIEIIRRKPLKPETEGVVTMIGLGLMVLL
MLAVTINDIMRYF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=65333 LBCZ_RS07485 WP_025012464.1 1514176..1515417(-) (eeP) [Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393]
ATGACCACAATCATTGCCTTTATTGTTATCTTCTGCATTCTTGTGGTGGTTCACGAGTTTGGCCATTTCTACTTTGCAAA
ACGCAGCGGTATTCTGGTGCGTGAATTTTCGATTGGCATGGGCCCGAAGCTTTGGGCGTCGCATAAAAATAATACGACCT
ATACATTGCGTCTGTTGCCACTGGGCGGTTATGTGCGTATGGCAGGCTGGCAGGACGATGAAGATGATATCAAACCAGGC
ACAATGCTGAGCCTGATTTTGAACGATGCCGGTAAAGTTGTCCGCATTAATGCCAGTGACAAAACAACATTAGAAGGCGG
CATGCCGGTTCAGGTCAGTCGTGTCGATTTGGTCAAGGATCTTATCATCGAAGGCTATCCGAATGGTGATGAAGATTCCT
TGCAAAGTTGGCAGGTTGATCATGACGCCACTATCATCGAAGAAGATGGCACAGAAGTCCAGATTGCGCCGGAAGACGTG
CAATTTCAAAATGCACCGGTTTGGCGACGACTACTGGTTAACTTTGCCGGACCGATGAATAACTTTATTCTCGCTATTTT
GACGTTCATCATTTATGGCCTGATTTTTGGTGTGCAGATTTTCAACACTAATCAGGTTGGAACCGTTCTTCCCGACTACC
CGGCTGCCCAAGCAGGACTTAAATCGAATGCTAGAGTTGAGTCGATTGACGGCAAAAAGATCCATTCATTTACGGATCTT
TCAACACAGGTCAGCAAACATACCGGCAAATCAGTCATGTTTACTGTCAAGCAGGATGGCAAAACGCAAAATATTGCGAT
TAAACCGGATAAGAAAGGTAAGATTGGCGTGATGGTGCCCGTTGAGAAGTCACCGGCGCGCGCCTTTACTTATGGGTTTA
CCCAAACATGGGATCTAGCTGTTCGTACATGGGATGTCTTGAAGTCAATGGTCACTGGCGGTTTTTCACTTAATAAGCTC
GCCGGGCCAGTCGGTATTTATACCATGACCAGCCAAAGTGCTAAAGGTGGACTGGCTGGCTTGTTGTTCTTCATGGGTTA
CCTAAGCCTTGGTTTGGGGATTTCCAACCTATTGCCGATTCCGGTCTTGGACGGCGGGAAAATTCTATTAAACCTGATCG
AAATCATTCGGCGCAAACCACTCAAACCGGAAACTGAAGGTGTGGTCACGATGATCGGTCTGGGTTTGATGGTCTTGTTG
ATGCTCGCCGTCACAATTAATGACATTATGCGTTACTTTTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(6-400)

PDZ domain (PDZ_2)

(206-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

49.061

100

0.506
  eeP Streptococcus thermophilus LMD-9

48.941

100

0.504

Multiple sequence alignment