Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG259_RS31735 Genome accession   NZ_CP108088
Coordinates   7005809..7006453 (+) Length   214 a.a.
NCBI ID   WP_328945374.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00250     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7000809..7011453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG259_RS31725 (OG259_31740) - 7003449..7004243 (-) 795 WP_328945372.1 transglycosylase SLT domain-containing protein -
  OG259_RS31730 (OG259_31745) - 7004671..7005816 (+) 1146 WP_328945373.1 GAF domain-containing sensor histidine kinase -
  OG259_RS31735 (OG259_31750) vraR 7005809..7006453 (+) 645 WP_328945374.1 response regulator transcription factor Regulator
  OG259_RS31740 (OG259_31755) - 7006607..7006849 (+) 243 WP_328945375.1 chaplin -
  OG259_RS31745 (OG259_31760) - 7007009..7007800 (-) 792 WP_328945376.1 hypothetical protein -
  OG259_RS31750 (OG259_31765) - 7007948..7008745 (+) 798 WP_328945377.1 ABC transporter ATP-binding protein -
  OG259_RS31755 (OG259_31770) - 7008821..7009249 (+) 429 WP_328945378.1 NfeD family protein -
  OG259_RS31760 (OG259_31775) - 7009343..7010281 (+) 939 WP_328945379.1 SPFH domain-containing protein -
  OG259_RS31765 (OG259_31780) - 7010374..7011147 (+) 774 WP_328945380.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23193.40 Da        Isoelectric Point: 5.6430

>NTDB_id=653319 OG259_RS31735 WP_328945374.1 7005809..7006453(+) (vraR) [Streptomyces sp. NBC_00250]
MADRQIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGVARAEELRPDVVLMDVKMPGTDGIEALKRLRELDNPA
KVLVVTSFTEQRTVVPALRAGASGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAGALLAQDDSHGGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGLTN

Nucleotide


Download         Length: 645 bp        

>NTDB_id=653319 OG259_RS31735 WP_328945374.1 7005809..7006453(+) (vraR) [Streptomyces sp. NBC_00250]
GTGGCTGACAGACAGATCCGTGTCCTGCTGGTCGACGACCACCAGGTCGTCCGCAGAGGCCTGCGCACCTTCCTGGAGGT
GCAGGACGACATAGAGGTGGTGGGGGAGGCCTCCGACGGCGCCGAGGGCGTCGCCAGGGCCGAGGAGCTCCGCCCCGACG
TGGTCCTCATGGACGTGAAGATGCCCGGTACGGACGGCATCGAGGCGCTGAAGCGGCTCCGCGAGCTCGACAACCCCGCG
AAGGTCCTCGTCGTCACCAGCTTCACCGAGCAGCGGACGGTGGTCCCCGCGCTCCGCGCCGGCGCCTCCGGATACGTCTA
CAAGGACATCGACCCCGACGCGCTCGCGGGCGCGATCCGCTCCGTCCACGCGGGGCACGTCCTGCTCCAGCCCGAGGTCG
CGGGCGCGCTCCTCGCCCAGGACGACTCCCACGGCGGTACGGGACGCGGCTCGACCCTCACGGAGCGCGAGCGCGAGGTG
CTCGGACTGATCGCGGACGGCCGGTCCAACCGGGAGATCGCCCGCGCGCTCGTCCTCTCCGAGAAGACGGTCAAGACGCA
CGTCTCGAACATCCTCATGAAGCTCGACCTCGCGGACCGCACCCAGGCGGCCCTCTGGGCGGTCCGGCACGGCCTCACCA
ACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.411

96.729

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

38.739

100

0.402