Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG259_RS22680 Genome accession   NZ_CP108088
Coordinates   4991292..4991891 (+) Length   199 a.a.
NCBI ID   WP_328943925.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00250     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4986292..4996891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG259_RS22655 (OG259_22670) - 4986834..4988198 (+) 1365 WP_328943922.1 aspartate aminotransferase family protein -
  OG259_RS22660 (OG259_22675) - 4988278..4988985 (+) 708 WP_328943923.1 GntR family transcriptional regulator -
  OG259_RS22665 (OG259_22680) - 4989161..4989811 (+) 651 WP_328943924.1 hypothetical protein -
  OG259_RS22670 (OG259_22685) - 4989879..4990583 (-) 705 WP_266900822.1 SLATT domain-containing protein -
  OG259_RS22675 (OG259_22690) - 4990852..4991187 (+) 336 WP_015034576.1 YbaB/EbfC family nucleoid-associated protein -
  OG259_RS22680 (OG259_22695) recR 4991292..4991891 (+) 600 WP_328943925.1 recombination mediator RecR Machinery gene
  OG259_RS22685 (OG259_22700) - 4991927..4992586 (+) 660 WP_328943926.1 DUF5063 domain-containing protein -
  OG259_RS22690 (OG259_22705) - 4992623..4994647 (+) 2025 WP_328943927.1 tetratricopeptide repeat protein -
  OG259_RS22695 (OG259_22710) - 4994716..4995198 (+) 483 WP_328943928.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21927.30 Da        Isoelectric Point: 5.1616

>NTDB_id=653292 OG259_RS22680 WP_328943925.1 4991292..4991891(+) (recR) [Streptomyces sp. NBC_00250]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKEKVRFCAVCGNVAQQEQCNICRDPRRDLTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLTRLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=653292 OG259_RS22680 WP_328943925.1 4991292..4991891(+) (recR) [Streptomyces sp. NBC_00250]
GTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCGACCGACGTACGGCGTCTCGCGCACGCGCTCCTGGAGGTCAAGGAGAAGGTCA
GGTTCTGCGCGGTCTGCGGAAACGTCGCACAGCAGGAGCAGTGCAACATCTGCCGCGACCCGCGCCGCGACCTGACCGTC
ATCTGTGTGGTCGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGGCGGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTCCGCATCCGCGAGCTGCTCACGCGGCTCGCCGACGGCA
CGGTCACCGAGCTGATCCTCGCGACCGACCCGAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGATCAAG
CCCATGGGACTCAAGGTGACCCGGCTCGCGAGCGGGCTCCCGGTCGGCGGCGACCTGGAGTACGCCGACGAGGTGACCCT
CGGCCGTGCCTTCGAGGGGCGGAGGCTGCTAGATGTATGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472