Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG259_RS22560 Genome accession   NZ_CP108088
Coordinates   4966410..4967072 (+) Length   220 a.a.
NCBI ID   WP_328943904.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00250     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4961410..4972072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG259_RS22545 (OG259_22560) - 4961759..4962628 (+) 870 WP_328943901.1 alpha/beta hydrolase -
  OG259_RS22550 (OG259_22565) - 4962740..4964965 (+) 2226 WP_328943902.1 FG-GAP-like repeat-containing protein -
  OG259_RS22555 (OG259_22570) - 4965043..4966413 (+) 1371 WP_328943903.1 histidine kinase -
  OG259_RS22560 (OG259_22575) vraR 4966410..4967072 (+) 663 WP_328943904.1 response regulator transcription factor Regulator
  OG259_RS22565 (OG259_22580) - 4967216..4968412 (+) 1197 WP_328943905.1 cytochrome P450 -
  OG259_RS22570 (OG259_22585) - 4968522..4969355 (-) 834 WP_328943906.1 alpha/beta hydrolase -
  OG259_RS22575 (OG259_22590) - 4969495..4969947 (+) 453 WP_328943907.1 helix-turn-helix domain-containing protein -
  OG259_RS22580 (OG259_22595) - 4969963..4971537 (-) 1575 WP_328943908.1 ABC transporter permease -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23420.12 Da        Isoelectric Point: 4.6262

>NTDB_id=653291 OG259_RS22560 WP_328943904.1 4966410..4967072(+) (vraR) [Streptomyces sp. NBC_00250]
MIRVLIVDDQIMVREGFSVLLGAMPDIEVVGEAVNGREAVAQVAALHPDVVLMDIRMPELNGIDATREIVAADADAKVLV
LTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPTVTKRLITEFAKAPGSSPRPPAMAQIGELTERE
TEVLVLIAQGLSNSEIAEHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAGLVRVGG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=653291 OG259_RS22560 WP_328943904.1 4966410..4967072(+) (vraR) [Streptomyces sp. NBC_00250]
GTGATCCGCGTACTGATCGTCGACGACCAGATCATGGTCCGCGAGGGGTTCTCGGTGCTGCTCGGCGCGATGCCGGACAT
CGAGGTCGTAGGGGAGGCAGTCAACGGCAGGGAGGCCGTCGCGCAGGTCGCCGCCCTCCACCCCGACGTCGTCCTCATGG
ACATCCGGATGCCCGAGCTGAACGGCATCGACGCCACCCGGGAGATCGTCGCCGCCGACGCGGACGCCAAGGTGCTCGTC
CTGACCACCTTCGACCTCGACGAGTACGTCTACCAGGCGCTCCGCGCCGGGGCCTCCGGCTTCCTGCTCAAGGACGCCTC
CGCCCGGCAGCTCGCCGACGGGGTGCGGGTCGTCGCGGCCGGCGAGGCGCTCCTCGCGCCGACCGTCACCAAGCGGCTGA
TCACCGAGTTCGCGAAGGCGCCGGGAAGTTCTCCGCGCCCGCCCGCGATGGCGCAGATAGGGGAGCTGACGGAGCGCGAG
ACGGAGGTCCTGGTGCTCATCGCGCAGGGCCTGTCGAACTCCGAGATCGCCGAGCACCTCGTCGTCGCCGAGTCGACGAT
CAAGACGCATGTGAGCCGCATCCTGGTGAAGCTGGGGCTGCGGGACCGGACGCAGGCGGCGGTCTTCGCCTACGAGGCGG
GTCTGGTGCGCGTCGGCGGCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.779

98.636

0.432
  degU Bacillus subtilis subsp. subtilis str. 168

41.704

100

0.423