Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG259_RS11695 Genome accession   NZ_CP108088
Coordinates   2630344..2631012 (+) Length   222 a.a.
NCBI ID   WP_266897379.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00250     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2625344..2636012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG259_RS11675 (OG259_11690) - 2625437..2626975 (-) 1539 WP_328942225.1 IucA/IucC family siderophore biosynthesis protein -
  OG259_RS11680 (OG259_11695) - 2627023..2628627 (+) 1605 WP_328942226.1 IucA/IucC family protein -
  OG259_RS11685 (OG259_11700) - 2628624..2629052 (-) 429 WP_328942227.1 hypothetical protein -
  OG259_RS11690 (OG259_11705) - 2629124..2630347 (+) 1224 WP_328942228.1 sensor histidine kinase -
  OG259_RS11695 (OG259_11710) vraR 2630344..2631012 (+) 669 WP_266897379.1 response regulator transcription factor Regulator
  OG259_RS11700 (OG259_11715) - 2631176..2632498 (+) 1323 WP_328942229.1 cytochrome ubiquinol oxidase subunit I -
  OG259_RS11705 (OG259_11720) - 2632601..2633380 (+) 780 WP_328942230.1 cytochrome d ubiquinol oxidase subunit II -
  OG259_RS11710 (OG259_11725) - 2633390..2634703 (-) 1314 WP_328947060.1 AI-2E family transporter -
  OG259_RS11715 (OG259_11730) - 2634956..2635150 (-) 195 WP_266897376.1 DUF3046 domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24078.72 Da        Isoelectric Point: 4.8752

>NTDB_id=653264 OG259_RS11695 WP_266897379.1 2630344..2631012(+) (vraR) [Streptomyces sp. NBC_00250]
MIRVVLADDQTLVRAGFRSILSDEEDIEVVGEAGDGEQAIALARELRPDVVLMDIRMPVLDGLEATRRITADQRLEGVRV
VILTTFDADDHVYGALRAGASGFLVKDTEPMELLHAVRVVARGDALIAPAVTRRLIAEFAGRADRQPDPSPRLNALTERE
REVLGLVGAGLSNDEIAGRLVLSPATAKTHVSRIMTKLAVRDRAQLVILAYESGMITPGWLA

Nucleotide


Download         Length: 669 bp        

>NTDB_id=653264 OG259_RS11695 WP_266897379.1 2630344..2631012(+) (vraR) [Streptomyces sp. NBC_00250]
ATGATCCGTGTCGTGCTGGCCGACGACCAGACCCTGGTCCGGGCCGGCTTCCGGTCGATCCTCTCCGACGAGGAGGACAT
CGAGGTCGTCGGCGAGGCGGGGGACGGCGAGCAGGCGATCGCGCTCGCCCGTGAACTGCGCCCGGACGTGGTCCTGATGG
ACATCCGCATGCCGGTGCTCGACGGACTGGAGGCCACCCGCCGCATCACCGCCGACCAGCGGCTCGAAGGGGTACGGGTG
GTCATCCTGACCACCTTCGACGCGGACGACCATGTGTACGGGGCGCTGCGCGCGGGCGCGTCGGGTTTCCTCGTGAAGGA
CACCGAGCCGATGGAACTGCTGCACGCGGTAAGGGTCGTGGCGCGCGGCGACGCCCTGATCGCCCCGGCCGTGACCCGCC
GTCTGATCGCCGAGTTCGCGGGCCGGGCCGACCGGCAGCCGGACCCGAGCCCCCGGCTCAACGCCCTCACCGAGCGCGAG
CGCGAGGTTCTCGGCCTGGTGGGCGCCGGACTCTCCAACGACGAGATCGCGGGCCGCCTCGTCCTCTCCCCCGCGACCGC
GAAGACGCACGTCAGCCGGATCATGACCAAGCTGGCCGTACGGGACCGGGCGCAGCTGGTGATCCTGGCGTACGAGTCCG
GAATGATCACGCCGGGCTGGCTGGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.326

96.847

0.41
  degU Bacillus subtilis subsp. subtilis str. 168

37.333

100

0.378