Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG259_RS09305 Genome accession   NZ_CP108088
Coordinates   2077208..2077837 (+) Length   209 a.a.
NCBI ID   WP_266898361.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00250     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2072208..2082837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG259_RS09285 (OG259_09305) - 2072725..2073804 (-) 1080 WP_328941826.1 ABC transporter permease -
  OG259_RS09290 (OG259_09310) - 2073995..2074954 (-) 960 WP_328941827.1 AraC family transcriptional regulator -
  OG259_RS09295 (OG259_09315) - 2075035..2075934 (+) 900 WP_328941828.1 NAD(P)H-binding protein -
  OG259_RS09300 (OG259_09320) - 2075972..2077204 (+) 1233 WP_328941829.1 sensor histidine kinase -
  OG259_RS09305 (OG259_09325) vraR 2077208..2077837 (+) 630 WP_266898361.1 response regulator transcription factor Regulator
  OG259_RS09310 (OG259_09330) - 2077846..2078190 (-) 345 WP_328941830.1 DUF5955 family protein -
  OG259_RS09315 (OG259_09335) - 2078387..2079013 (+) 627 WP_328941831.1 nucleotidyltransferase family protein -
  OG259_RS09320 (OG259_09340) aceB 2079240..2080871 (+) 1632 WP_328941832.1 malate synthase A -
  OG259_RS09325 (OG259_09345) - 2081119..2082276 (+) 1158 WP_328941833.1 GDSL-type esterase/lipase family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 21767.03 Da        Isoelectric Point: 5.6234

>NTDB_id=653256 OG259_RS09305 WP_266898361.1 2077208..2077837(+) (vraR) [Streptomyces sp. NBC_00250]
MTTIRLLLADDHPVVRAGLRAVLDTEPDFAVVAEAATAERAVELAAAGDVDVVLMDLQFGSGMHGSEATAAITAAPGGPK
VLVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVAHRLMDRMRTPAEALTKRELEVLQLVGE
GLSNQQISKVLFLSQATVKSHLVHIFAKLGVDSRTAAVATATARRLIRR

Nucleotide


Download         Length: 630 bp        

>NTDB_id=653256 OG259_RS09305 WP_266898361.1 2077208..2077837(+) (vraR) [Streptomyces sp. NBC_00250]
ATGACCACCATCCGCCTTCTCCTGGCCGACGACCACCCGGTGGTACGGGCCGGCCTGCGCGCGGTCCTGGACACGGAGCC
CGACTTCGCCGTCGTCGCGGAGGCGGCGACCGCCGAGCGCGCGGTGGAGCTGGCCGCCGCCGGGGACGTGGACGTGGTCC
TGATGGACCTGCAGTTCGGCTCCGGGATGCACGGCTCGGAGGCGACGGCAGCGATCACGGCGGCGCCCGGCGGGCCGAAG
GTGCTGGTCCTGACGACGTACGACACGGACGCGGACATCCTCGCGGCGGTGGAGGCGGGCGCCTCCGGCTACCTCCTGAA
GGACGCCCCGCCGGAGGAGCTGGCGGCGGCGGTCCGGACGGCGGCGGCCGGGCAGTCGGCGCTCGCCCCGGCGGTGGCGC
ACCGGCTGATGGACCGGATGCGGACCCCCGCGGAGGCCCTGACCAAGCGCGAGCTGGAGGTGCTCCAGCTGGTGGGCGAG
GGCCTGTCGAACCAGCAGATCAGCAAGGTGCTGTTCCTGAGCCAGGCGACGGTGAAGTCCCATCTGGTGCACATCTTCGC
GAAGCTGGGCGTCGACTCCCGCACGGCGGCGGTGGCGACGGCGACGGCACGCCGTCTGATCAGGCGGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-200)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.278

100

0.383
  degU Bacillus subtilis subsp. subtilis str. 168

35.294

100

0.373