Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT77_RS39020 Genome accession   NZ_CP108087
Coordinates   8787518..8788183 (+) Length   221 a.a.
NCBI ID   WP_328833060.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00252     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8782518..8793183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT77_RS39000 (OHT77_39005) - 8783581..8784843 (+) 1263 WP_328833057.1 geranylgeranyl reductase family protein -
  OHT77_RS39005 (OHT77_39010) - 8784833..8785282 (-) 450 WP_266774502.1 nitroreductase family deazaflavin-dependent oxidoreductase -
  OHT77_RS39010 (OHT77_39015) - 8785450..8786142 (+) 693 WP_328833058.1 TetR/AcrR family transcriptional regulator -
  OHT77_RS39015 (OHT77_39020) - 8786313..8787521 (+) 1209 WP_328833059.1 sensor histidine kinase -
  OHT77_RS39020 (OHT77_39025) vraR 8787518..8788183 (+) 666 WP_328833060.1 response regulator transcription factor Regulator
  OHT77_RS39025 (OHT77_39030) - 8788144..8788431 (-) 288 WP_328833061.1 DUF6332 family protein -
  OHT77_RS39030 (OHT77_39035) - 8788619..8790100 (-) 1482 WP_328833062.1 MFS transporter -
  OHT77_RS39035 (OHT77_39040) - 8790188..8790565 (+) 378 WP_328833063.1 MarR family transcriptional regulator -
  OHT77_RS39040 (OHT77_39045) - 8790594..8791562 (-) 969 WP_328833064.1 alpha/beta hydrolase -
  OHT77_RS39045 (OHT77_39050) - 8791787..8792242 (+) 456 WP_328833065.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23959.67 Da        Isoelectric Point: 4.7113

>NTDB_id=653232 OHT77_RS39020 WP_328833060.1 8787518..8788183(+) (vraR) [Streptomyces sp. NBC_00252]
MIRVLLADDQSLVRAGFKALLDAQPDIEVAGEAADGEEAVRKVGELRPDVVLMDIRMPLLDGLAATRRITGDGDLKDVKV
VMLTTFELDEYVFEAIRSGASGFLVKDTEPDELLRAVRAVVDGDALLSPGVTRRLIAEFAARSKEPATADALTQLTERER
EVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=653232 OHT77_RS39020 WP_328833060.1 8787518..8788183(+) (vraR) [Streptomyces sp. NBC_00252]
GTGATCCGCGTACTGCTCGCCGACGACCAGTCCCTGGTCCGGGCCGGGTTCAAGGCGCTGCTCGACGCCCAGCCCGACAT
CGAGGTGGCCGGCGAGGCCGCCGACGGTGAGGAGGCCGTGCGCAAGGTGGGTGAACTGCGCCCCGATGTCGTTCTGATGG
ACATCCGCATGCCGTTGCTCGACGGCCTGGCCGCGACGCGCCGGATCACCGGGGACGGTGATCTGAAGGACGTGAAGGTG
GTGATGCTGACGACCTTCGAACTCGACGAGTACGTCTTCGAGGCGATCCGCTCCGGCGCGTCCGGCTTCCTGGTGAAGGA
CACCGAGCCGGACGAACTCCTGCGCGCGGTAAGGGCGGTGGTCGACGGCGACGCGCTGCTGTCACCCGGGGTGACCCGTC
GGCTCATCGCCGAGTTCGCGGCCCGCTCCAAGGAGCCCGCGACCGCCGACGCCCTCACCCAACTCACCGAGCGGGAACGG
GAGGTGATGGCCCTCGTCGGCATCGGCCTCTCCAACGAGGAGATCGCCCGCCGTCTGGTCGTCAGCCCGCTCACCGCCAA
GACCCACGTCAGCCGCACGATGGTGAAACTCGGCGCCCGGGACAGGGCCCAACTGGTCGTGCTGGCCTACGAGTCGGGGT
TGGTGCGCCCCGGCTGGCTGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.605

97.285

0.376
  degU Bacillus subtilis subsp. subtilis str. 168

36.889

100

0.376