Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHU11_RS24010 Genome accession   NZ_CP108082
Coordinates   5345075..5345674 (+) Length   199 a.a.
NCBI ID   WP_259927919.1    Uniprot ID   A0ABW2WY37
Organism   Streptomyces sp. NBC_00257     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5340075..5350674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU11_RS23985 (OHU11_23965) - 5340396..5341769 (+) 1374 WP_266690072.1 aspartate aminotransferase family protein -
  OHU11_RS23990 (OHU11_23970) - 5341888..5342634 (+) 747 WP_266690073.1 GntR family transcriptional regulator -
  OHU11_RS23995 (OHU11_23975) - 5342738..5343388 (+) 651 WP_266690074.1 hypothetical protein -
  OHU11_RS24000 (OHU11_23980) - 5343521..5344330 (-) 810 WP_266690075.1 SLATT domain-containing protein -
  OHU11_RS24005 (OHU11_23985) - 5344686..5345021 (+) 336 WP_072487886.1 YbaB/EbfC family nucleoid-associated protein -
  OHU11_RS24010 (OHU11_23990) recR 5345075..5345674 (+) 600 WP_259927919.1 recombination mediator RecR Machinery gene
  OHU11_RS24015 (OHU11_23995) - 5345806..5346465 (+) 660 WP_124719581.1 DUF5063 domain-containing protein -
  OHU11_RS24020 (OHU11_24000) - 5346480..5346764 (-) 285 WP_266690076.1 hypothetical protein -
  OHU11_RS24025 (OHU11_24005) - 5347038..5348309 (+) 1272 WP_124719579.1 aspartate kinase -
  OHU11_RS24030 (OHU11_24010) - 5348306..5349370 (+) 1065 WP_266690077.1 aspartate-semialdehyde dehydrogenase -
  OHU11_RS24035 (OHU11_24015) - 5349739..5350314 (+) 576 WP_259927915.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21901.18 Da        Isoelectric Point: 5.1558

>NTDB_id=653120 OHU11_RS24010 WP_259927919.1 5345075..5345674(+) (recR) [Streptomyces sp. NBC_00257]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCSVCGNVAQQEQCNICRDTRRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=653120 OHU11_RS24010 WP_259927919.1 5345075..5345674(+) (recR) [Streptomyces sp. NBC_00257]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCGACCGATGTGCGGCGCCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGTTCGGTCTGCGGCAACGTCGCCCAGCAGGAGCAGTGCAACATCTGCCGGGACACGCGCCGCGACCCGTCGGTG
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGGTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGATCTGCGCATCCGCGAGCTGCTCGCCCGCCTCGCCGACGGTT
CGATCACGGAACTGATCCTGGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGATCAAG
CCGATGGGCCTGCGGGTCACCAGACTGGCCAGCGGCCTGCCCGTCGGCGGCGACCTGGAGTACGCGGACGAGGTCACCCT
GGGCCGCGCCTTCGAGGGGAGGCGCCTGCTCGATGTGTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452