Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHU11_RS06855 Genome accession   NZ_CP108082
Coordinates   1444917..1445567 (+) Length   216 a.a.
NCBI ID   WP_266687127.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00257     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1439917..1450567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU11_RS06820 (OHU11_06800) - 1439953..1440603 (+) 651 WP_266687118.1 hypothetical protein -
  OHU11_RS06825 (OHU11_06805) - 1440717..1440893 (-) 177 WP_266687119.1 hypothetical protein -
  OHU11_RS06830 (OHU11_06810) - 1440926..1441324 (-) 399 WP_266687121.1 hypothetical protein -
  OHU11_RS06835 (OHU11_06815) - 1441321..1442175 (-) 855 WP_266687122.1 IS5 family transposase -
  OHU11_RS06840 (OHU11_06820) - 1442246..1442914 (-) 669 WP_266687124.1 VTT domain-containing protein -
  OHU11_RS06845 (OHU11_06825) - 1442911..1443639 (-) 729 WP_266687125.1 methyltransferase domain-containing protein -
  OHU11_RS06850 (OHU11_06830) - 1443838..1444920 (+) 1083 WP_266687126.1 histidine kinase -
  OHU11_RS06855 (OHU11_06835) vraR 1444917..1445567 (+) 651 WP_266687127.1 response regulator transcription factor Regulator
  OHU11_RS06860 (OHU11_06840) - 1445995..1446801 (-) 807 WP_266687130.1 hypothetical protein -
  OHU11_RS06865 (OHU11_06845) - 1446817..1447188 (-) 372 WP_266687131.1 hypothetical protein -
  OHU11_RS06870 (OHU11_06855) - 1448130..1448303 (-) 174 WP_323180351.1 ASCH domain-containing protein -
  OHU11_RS06875 (OHU11_06860) - 1448320..1448508 (-) 189 WP_266687132.1 hypothetical protein -
  OHU11_RS06880 (OHU11_06865) - 1449189..1449908 (-) 720 WP_266687133.1 DJ-1/PfpI family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23318.65 Da        Isoelectric Point: 5.8708

>NTDB_id=653080 OHU11_RS06855 WP_266687127.1 1444917..1445567(+) (vraR) [Streptomyces sp. NBC_00257]
MIRSMIVDDDALVRLGLADLLDGDPDIEVTAQASDGLQAIEQATAHRIDVALVDVRMPRMDGITATTRLRALPHPPKVIT
LTTFDLDEYAYNALAAGADGFLLKDTDPTEILRAVHLVAAGSAMLHPAAARRVIDRYHATDQPRTATAQARLERLTPRER
DVLALLAQGDTNADIATHLAMRESTVKAHVSRILATLDVTNRVQAALLARNAGLTP

Nucleotide


Download         Length: 651 bp        

>NTDB_id=653080 OHU11_RS06855 WP_266687127.1 1444917..1445567(+) (vraR) [Streptomyces sp. NBC_00257]
ATGATCCGCTCCATGATCGTCGACGACGACGCCCTGGTCCGCCTCGGCCTGGCCGACCTCCTCGACGGCGACCCGGACAT
CGAAGTGACTGCCCAGGCAAGCGACGGCCTCCAGGCCATCGAGCAGGCCACCGCCCACCGCATCGACGTCGCCCTCGTCG
ACGTCCGGATGCCCCGCATGGACGGCATCACCGCCACCACCCGACTGCGCGCCCTGCCCCACCCACCGAAGGTGATCACA
CTGACCACCTTCGACCTCGACGAATACGCCTACAACGCCCTGGCCGCCGGAGCCGACGGATTCCTACTCAAGGACACCGA
CCCGACGGAGATCCTGCGCGCCGTCCATCTGGTGGCCGCCGGCTCGGCCATGCTCCACCCAGCCGCCGCCCGACGCGTCA
TCGACCGCTACCACGCCACCGACCAGCCCCGGACCGCCACAGCCCAGGCCCGCCTCGAACGGCTCACCCCACGCGAACGC
GATGTCCTCGCACTGCTCGCACAAGGCGACACCAACGCCGACATCGCCACCCACCTCGCCATGCGCGAAAGCACCGTGAA
AGCCCACGTCAGCCGCATCCTGGCCACCCTCGACGTCACCAACCGCGTCCAAGCCGCACTCCTGGCACGCAACGCGGGAC
TCACCCCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.406

100

0.366
  degU Bacillus subtilis subsp. subtilis str. 168

35.586

100

0.366