Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG718_RS50455 Genome accession   NZ_CP108081
Coordinates   11377281..11377946 (-) Length   221 a.a.
NCBI ID   WP_143643116.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 11372281..11382946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS50435 (OG718_50435) - 11372857..11373153 (+) 297 WP_328847421.1 hypothetical protein -
  OG718_RS50440 (OG718_50440) - 11373209..11373853 (+) 645 WP_143643113.1 (2Fe-2S)-binding protein -
  OG718_RS50445 (OG718_50445) - 11373859..11374839 (+) 981 WP_328847422.1 xanthine dehydrogenase family protein subunit M -
  OG718_RS50450 (OG718_50450) - 11374836..11377025 (+) 2190 WP_328847423.1 xanthine dehydrogenase family protein molybdopterin-binding subunit -
  OG718_RS50455 (OG718_50455) vraR 11377281..11377946 (-) 666 WP_143643116.1 response regulator transcription factor Regulator
  OG718_RS50460 (OG718_50460) - 11377943..11379220 (-) 1278 WP_143643117.1 histidine kinase -
  OG718_RS50465 (OG718_50465) - 11379343..11380197 (-) 855 WP_328847424.1 ABC transporter permease subunit -
  OG718_RS50470 (OG718_50470) - 11380194..11381132 (-) 939 WP_143643119.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23864.28 Da        Isoelectric Point: 5.5808

>NTDB_id=653068 OG718_RS50455 WP_143643116.1 11377281..11377946(-) (vraR) [Streptomyces sp. NBC_00258]
MTVRVLLADDQALVRTSFRMLIESEPDLEVVGEAATGEEAVALARSTRADVVLMDIRMPDMDGLAATRAISADEDLAGVR
VLILTTFEADEHVFHALRAGASGFLGKGVELSYLLDAIRLVARGEALLSPRATRTLIAHYLASPDRTSTPTPELTALTDR
ERQVLHFVAAGLSNDTIAEQLHISPSTAKTHVNRIMTKLGVRDRAQLVVIAYQNGYAHPGA

Nucleotide


Download         Length: 666 bp        

>NTDB_id=653068 OG718_RS50455 WP_143643116.1 11377281..11377946(-) (vraR) [Streptomyces sp. NBC_00258]
ATGACCGTCCGCGTTCTGCTCGCCGACGACCAGGCCCTCGTACGCACCAGCTTCCGCATGCTCATCGAGTCGGAGCCGGA
CCTGGAGGTCGTCGGAGAGGCGGCGACGGGCGAAGAGGCGGTCGCCCTGGCCCGAAGTACCCGTGCCGACGTCGTGCTGA
TGGACATCCGGATGCCGGACATGGACGGCCTCGCAGCCACCCGAGCCATCTCCGCGGACGAAGACCTCGCGGGCGTCCGG
GTGCTGATCCTGACGACCTTCGAAGCCGACGAGCACGTCTTCCACGCGCTGCGCGCCGGGGCCAGCGGGTTCCTCGGCAA
AGGCGTGGAACTCTCCTACCTCCTCGACGCCATCCGGCTGGTCGCCCGCGGAGAGGCGCTGCTGTCACCCAGGGCGACCA
GGACACTCATCGCCCACTACCTCGCCTCACCCGACAGGACGAGCACTCCGACCCCGGAGCTGACGGCGCTGACCGACCGC
GAGCGCCAAGTGCTCCATTTCGTGGCCGCCGGACTCTCCAACGACACCATCGCCGAACAGCTCCACATCTCGCCCTCGAC
CGCCAAGACCCACGTGAACCGCATCATGACCAAGCTCGGCGTCCGCGACCGCGCCCAACTCGTCGTGATCGCCTACCAGA
ACGGCTACGCCCACCCCGGCGCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(156-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.14

97.285

0.371
  degU Bacillus subtilis subsp. subtilis str. 168

36.607

100

0.371