Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L6L63_RS21280 Genome accession   NZ_CP091652
Coordinates   4408520..4409149 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain KMi025     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4403520..4414149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L63_RS21260 (L6L63_21265) ycbZ 4403921..4405681 (-) 1761 WP_000152888.1 Lon protease family protein -
  L6L63_RS21265 (L6L63_21270) matP 4405867..4406319 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  L6L63_RS21270 (L6L63_21275) ompA 4406395..4407435 (-) 1041 WP_001400178.1 porin OmpA -
  L6L63_RS21275 (L6L63_21280) sulA 4407792..4408301 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  L6L63_RS21280 (L6L63_21285) sxy/tfoX 4408520..4409149 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L6L63_RS21285 (L6L63_21290) yccS 4409112..4411274 (-) 2163 WP_000875058.1 YccS family putative transporter -
  L6L63_RS21290 (L6L63_21295) yccF 4411284..4411730 (-) 447 WP_001261235.1 YccF domain-containing protein -
  L6L63_RS21295 (L6L63_21300) helD 4411853..4413907 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=653067 L6L63_RS21280 WP_000839153.1 4408520..4409149(+) (sxy/tfoX) [Escherichia coli strain KMi025]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=653067 L6L63_RS21280 WP_000839153.1 4408520..4409149(+) (sxy/tfoX) [Escherichia coli strain KMi025]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1